Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58380 - ( SIP1 (SOS3-INTERACTING PROTEIN 1) ATP binding / kinase/ protein kinase/ protein serine/threonine kinase )

19 Proteins interacs with AT5G58380
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G47100

Experimental

FSW = 0.0158

Unknown

CBL9 CALCIUM ION BINDING
AT5G24270

Experimental

two hybrid

FSW = 0.0540

Unknown

SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE
AT4G01420

Experimental

two hybrid

FSW = 0.0933

Unknown

CBL5 (CALCINEURIN B-LIKE PROTEIN 5) CALCIUM ION BINDING
AT5G39670

Experimental

protein array

FSW = 0.0364

Unknown

CALCIUM-BINDING EF HAND FAMILY PROTEIN
AT3G09440

Predicted

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.0165

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 3 (HSC70-3) (HSP70-3)
AT5G65430

Predicted

Phenotypic Enhancement

FSW = 0.0303

Unknown

GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT1G77750

Predicted

Phenotypic Enhancement

FSW = 0.0455

Unknown

30S RIBOSOMAL PROTEIN S13 CHLOROPLAST PUTATIVE
AT2G30260

Predicted

Affinity Capture-MS

FSW = 0.0245

Unknown

U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G57300

Predicted

Phenotypic Enhancement

FSW = 0.0485

Unknown

INO80 (INO80 ORTHOLOG) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT1G43910

Predicted

Phenotypic Enhancement

FSW = 0.0235

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G80710

Predicted

Phenotypic Enhancement

FSW = 0.0284

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G27440

Predicted

Phenotypic Enhancement

FSW = 0.0386

Unknown

URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE
AT3G57140

Predicted

Affinity Capture-MS

FSW = 0.0348

Unknown

PATATIN-RELATED
AT4G24160

Predicted

Phenotypic Enhancement

FSW = 0.0333

Unknown

HYDROLASE ALPHA/BETA FOLD FAMILY PROTEIN
AT1G66590

Predicted

two hybrid

FSW = 0.0232

Unknown

COX19 FAMILY PROTEIN
AT2G42005

Predicted

Phenotypic Enhancement

FSW = 0.0383

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT5G38030

Predicted

Colocalization

FSW = 0.0303

Unknown

MATE EFFLUX FAMILY PROTEIN
AT5G64760

Predicted

Phenotypic Enhancement

FSW = 0.0267

Unknown

RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B)
AT3G16650

Predicted

Gene fusion method

FSW = 0.0169

Unknown

PP1/PP2A PHOSPHATASES PLEIOTROPIC REGULATOR 2 (PRL2)

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454