Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58410 - ( binding / protein binding / zinc ion binding )

13 Proteins interacs with AT5G58410
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14800

Predicted

Affinity Capture-MS

FSW = 0.0632

Unknown

PBD2 (20S PROTEASOME BETA SUBUNIT 2) PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0100

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G10710

Predicted

Phenotypic Enhancement

FSW = 0.2333

Unknown

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT1G65440

Predicted

Phenotypic Enhancement

FSW = 0.1795

Unknown

GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR
AT2G37470

Predicted

synthetic growth defect

FSW = 0.0462

Unknown

HISTONE H2B PUTATIVE
AT2G38560

Predicted

Phenotypic Enhancement

FSW = 0.1225

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT4G08350

Predicted

Phenotypic Enhancement

FSW = 0.1634

Unknown

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G06210

Predicted

synthetic growth defect

FSW = 0.1531

Unknown

ELF8 (EARLY FLOWERING 8) BINDING
AT1G61040

Predicted

Synthetic Lethality

FSW = 0.2038

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G79730

Predicted

synthetic growth defect

FSW = 0.1984

Unknown

ELF7 (EARLY FLOWERING 7)
AT3G22590

Predicted

Phenotypic Enhancement

FSW = 0.1042

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT5G10390Predicted

synthetic growth defect

FSW = 0.0468

Unknown

HISTONE H3
AT5G63670

Predicted

Phenotypic Enhancement

FSW = 0.2804

Unknown

SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454