Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58575 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 19 plant structures EXPRESSED DURING 11 growth stages CONTAINS InterPro DOMAIN/s Sgf11 transcriptional regulation (InterProIPR013246) Has 148 Blast hits to 148 proteins in 67 species Archae - 0 Bacteria - 0 Metazoa - 94 Fungi - 32 Plants - 16 Viruses - 0 Other Eukaryotes - 6 (source NCBI BLink) )

18 Proteins interacs with AT5G58575
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G09320

Predicted

two hybrid

FSW = 0.0635

Unknown

NDPK1 ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE
AT5G63310

Predicted

two hybrid

FSW = 0.0254

Unknown

NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING
AT3G58500

Predicted

two hybrid

FSW = 0.0420

Unknown

PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G18080

Predicted

two hybrid

FSW = 0.0256

Unknown

ATARCA NUCLEOTIDE BINDING
AT2G40300

Predicted

two hybrid

FSW = 0.0847

Unknown

ATFER4 (FERRITIN 4) BINDING / FERRIC IRON BINDING / OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G01600

Predicted

two hybrid

FSW = 0.0476

Unknown

ATFER1 FERRIC IRON BINDING / IRON ION BINDING
AT3G27100

Predicted

two hybrid

FSW = 0.0693

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST ENVELOPE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSCRIPTION FACTOR ENHANCER OF YELLOW 2 (INTERPROIPR018783) HAS 197 BLAST HITS TO 197 PROTEINS IN 62 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 152 FUNGI - 8 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 13 (SOURCE NCBI BLINK)
AT2G27710

Predicted

two hybrid

FSW = 0.0260

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B)
AT4G00100

Predicted

two hybrid

two hybrid

FSW = 0.0258

Unknown

ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME
AT1G10430

Predicted

two hybrid

FSW = 0.0260

Unknown

PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G48370

Predicted

two hybrid

FSW = 0.0508

Unknown

THIOESTERASE FAMILY PROTEIN
AT3G18130

Predicted

two hybrid

FSW = 0.0339

Unknown

RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING
AT2G26990

Predicted

two hybrid

two hybrid

FSW = 0.0401

Unknown

FUS12 (FUSCA 12)
AT4G33865

Predicted

two hybrid

FSW = 0.1023

Unknown

40S RIBOSOMAL PROTEIN S29 (RPS29C)
AT5G40040

Predicted

two hybrid

FSW = 0.0586

Unknown

60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2E)
AT4G09140

Predicted

two hybrid

two hybrid

FSW = 0.0173

Unknown

MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING
AT5G65990

Predicted

two hybrid

FSW = 0.0462

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT3G44010Predicted

two hybrid

FSW = 0.0711

Unknown

40S RIBOSOMAL PROTEIN S29 (RPS29B)

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454