Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58575 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 19 plant structures EXPRESSED DURING 11 growth stages CONTAINS InterPro DOMAIN/s Sgf11 transcriptional regulation (InterProIPR013246) Has 148 Blast hits to 148 proteins in 67 species Archae - 0 Bacteria - 0 Metazoa - 94 Fungi - 32 Plants - 16 Viruses - 0 Other Eukaryotes - 6 (source NCBI BLink) )
18 Proteins interacs with AT5G58575Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G09320 | Predictedtwo hybrid | FSW = 0.0635
| Unknown | NDPK1 ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE |
AT5G63310 | Predictedtwo hybrid | FSW = 0.0254
| Unknown | NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP BINDING / NUCLEOSIDE DIPHOSPHATE KINASE/ PROTEIN BINDING |
AT3G58500 | Predictedtwo hybrid | FSW = 0.0420
| Unknown | PP2A-3 (PROTEIN PHOSPHATASE 2A-3) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT1G18080 | Predictedtwo hybrid | FSW = 0.0256
| Unknown | ATARCA NUCLEOTIDE BINDING |
AT2G40300 | Predictedtwo hybrid | FSW = 0.0847
| Unknown | ATFER4 (FERRITIN 4) BINDING / FERRIC IRON BINDING / OXIDOREDUCTASE/ TRANSITION METAL ION BINDING |
AT5G01600 | Predictedtwo hybrid | FSW = 0.0476
| Unknown | ATFER1 FERRIC IRON BINDING / IRON ION BINDING |
AT3G27100 | Predictedtwo hybrid | FSW = 0.0693
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CHLOROPLAST ENVELOPE EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TRANSCRIPTION FACTOR ENHANCER OF YELLOW 2 (INTERPROIPR018783) HAS 197 BLAST HITS TO 197 PROTEINS IN 62 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 152 FUNGI - 8 PLANTS - 24 VIRUSES - 0 OTHER EUKARYOTES - 13 (SOURCE NCBI BLINK) |
AT2G27710 | Predictedtwo hybrid | FSW = 0.0260
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2B) |
AT4G00100 | Predictedtwo hybridtwo hybrid | FSW = 0.0258
| Unknown | ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G10430 | Predictedtwo hybrid | FSW = 0.0260
| Unknown | PP2A-2 PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G48370 | Predictedtwo hybrid | FSW = 0.0508
| Unknown | THIOESTERASE FAMILY PROTEIN |
AT3G18130 | Predictedtwo hybrid | FSW = 0.0339
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
AT2G26990 | Predictedtwo hybridtwo hybrid | FSW = 0.0401
| Unknown | FUS12 (FUSCA 12) |
AT4G33865 | Predictedtwo hybrid | FSW = 0.1023
| Unknown | 40S RIBOSOMAL PROTEIN S29 (RPS29C) |
AT5G40040 | Predictedtwo hybrid | FSW = 0.0586
| Unknown | 60S ACIDIC RIBOSOMAL PROTEIN P2 (RPP2E) |
AT4G09140 | Predictedtwo hybridtwo hybrid | FSW = 0.0173
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
AT5G65990 | Predictedtwo hybrid | FSW = 0.0462
| Unknown | AMINO ACID TRANSPORTER FAMILY PROTEIN |
AT3G44010 | Predictedtwo hybrid | FSW = 0.0711
| Unknown | 40S RIBOSOMAL PROTEIN S29 (RPS29B) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454