Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58590 - ( RANBP1 (RAN BINDING PROTEIN 1) protein binding )
15 Proteins interacs with AT5G58590Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G20020 | Experimentaltwo hybrid | FSW = 0.2359
| Class A:nucleusClass B:unclearClass D:cytosol (p = 0.67) | RAN2 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G20010 | Experimentaltwo hybrid | FSW = 0.1546
| Class A:nucleusClass B:plasma membraneperoxisomeClass D:cytosol (p = 0.67) | RAN-1 GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G55190 | Experimentaltwo hybrid | FSW = 0.2367
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT5G19320 | Predictedin vitroin vitroin vivoin vivoin vivoin vitro | FSW = 0.1596
| Class C:nucleus | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT1G72560 | Predictedin vitro | FSW = 0.0635
| Class C:nucleus | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT5G17020 | Predictedin vitro | FSW = 0.1323
| Class C:nucleus | XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR |
AT5G53480 | Predictedin vitroin vitroin vivo | FSW = 0.0225
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT3G12040 | PredictedAffinity Capture-MS | FSW = 0.1111
| Unknown | DNA-3-METHYLADENINE GLYCOSYLASE (MAG) |
AT2G21070 | Predictedtwo hybrid | FSW = 0.1778
| Unknown | FIO1 (FIONA1) METHYLTRANSFERASE |
AT2G35320 | Predictedtwo hybrid | FSW = 0.0889
| Unknown | ATEYA (ARABIDOPSIS THALIANA EYES ABSENT HOMOLOG) PROTEIN TYROSINE PHOSPHATASE METAL-DEPENDENT |
AT4G11330 | Predictedtwo hybrid | FSW = 0.0323
| Unknown | ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE |
AT1G69680 | Predictedin vitro | FSW = 0.2268
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MOG1/PSBP/DUF1795 ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016124) RAN-INTERACTING MOG1 PROTEIN (INTERPROIPR007681) MOG1/PSBP ALPHA/BETA/ALPHA SANDWICH (INTERPROIPR016123) HAS 202 BLAST HITS TO 202 PROTEINS IN 100 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 55 FUNGI - 83 PLANTS - 25 VIRUSES - 0 OTHER EUKARYOTES - 39 (SOURCE NCBI BLINK) |
AT2G16950 | Predictedin vitrotwo hybridin vitrotwo hybridReconstituted Complex | FSW = 0.0661
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT3G57870 | Predictedin vitroin vitroAffinity Capture-MS | FSW = 0.0253
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT5G16040 | Predictedin vitro | FSW = 0.0421
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454