Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G58640 - ( selenoprotein-related )
48 Proteins interacs with AT5G58640Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G33090 | PredictedPhenotypic Enhancement | FSW = 0.0454
| Class C:plasma membrane | APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE |
AT3G47960 | PredictedAffinity Capture-MS | FSW = 0.0335
| Class C:plasma membrane | PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN |
AT3G54840 | PredictedPhenotypic Enhancement | FSW = 0.1040
| Class C:endoplasmic reticulum | ARA6 GTP BINDING / GTPASE |
AT4G17730 | PredictedAffinity Capture-MS | FSW = 0.0346
| Unknown | SYP23 (SYNTAXIN OF PLANTS 23) SNAP RECEPTOR |
AT4G16660 | PredictedPhenotypic Enhancement | FSW = 0.1314
| Unknown | HEAT SHOCK PROTEIN 70 PUTATIVE / HSP70 PUTATIVE |
AT4G01840 | PredictedAffinity Capture-MS | FSW = 0.0377
| Unknown | KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL |
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.0084
| Unknown | UNKNOWN PROTEIN |
AT5G43320 | PredictedAffinity Capture-Western | FSW = 0.0692
| Unknown | CKL8 (CASEIN KINASE I-LIKE 8) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G65430 | PredictedPhenotypic Enhancement | FSW = 0.0197
| Unknown | GRF8 (GENERAL REGULATORY FACTOR 8) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING |
AT1G32470 | PredictedPhenotypic Enhancement | FSW = 0.0447
| Unknown | GLYCINE CLEAVAGE SYSTEM H PROTEIN MITOCHONDRIAL PUTATIVE |
AT3G44610 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternCo-purificationColocalization | FSW = 0.1556
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT3G54670 | PredictedPhenotypic Enhancement | FSW = 0.0522
| Unknown | TTN8 (TITAN8) ATP BINDING / TRANSPORTER |
AT4G28860 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerntwo hybridCo-purificationColocalization | FSW = 0.3171
| Unknown | CKL4 (CASEIN KINASE I-LIKE 4) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT4G09800 | PredictedPhenotypic Enhancement | FSW = 0.1453
| Unknown | RPS18C (S18 RIBOSOMAL PROTEIN) RNA BINDING / NUCLEIC ACID BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
AT2G36170 | PredictedAffinity Capture-MS | FSW = 0.0343
| Unknown | UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A) |
AT1G72560 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.2198
| Unknown | PSD (PAUSED) NUCLEOBASE NUCLEOSIDE NUCLEOTIDE AND NUCLEIC ACID TRANSMEMBRANE TRANSPORTER/ TRNA BINDING |
AT5G47630 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-Western | FSW = 0.1625
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT2G19980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1475
| Unknown | ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN |
AT4G33710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.2261
| Unknown | PATHOGENESIS-RELATED PROTEIN PUTATIVE |
AT1G25260 | PredictedAffinity Capture-Western | FSW = 0.0180
| Unknown | ACIDIC RIBOSOMAL PROTEIN P0-RELATED |
AT1G26320 | PredictedAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternCo-purificationColocalization | FSW = 0.1949
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT1G68530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSColocalizationCo-purification | FSW = 0.3503
| Unknown | KCS6 (3-KETOACYL-COA SYNTHASE 6) CATALYTIC/ TRANSFERASE TRANSFERRING ACYL GROUPS OTHER THAN AMINO-ACYL GROUPS |
AT1G78960 | PredictedAffinity Capture-MS | FSW = 0.0310
| Unknown | ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G23080 | PredictedReconstituted Complex | FSW = 0.0285
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT2G28720 | PredictedAffinity Capture-MS | FSW = 0.0157
| Unknown | HISTONE H2B PUTATIVE |
AT3G27440 | PredictedPhenotypic Enhancement | FSW = 0.0486
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT3G28610 | PredictedAffinity Capture-MS | FSW = 0.0315
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G04700 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternReconstituted Complex | FSW = 0.1609
| Unknown | CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT4G17640 | PredictedAffinity Capture-MS | FSW = 0.0364
| Unknown | CKB2 PROTEIN KINASE CK2 REGULATOR |
AT4G21480 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-Western | FSW = 0.1563
| Unknown | CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT4G35520 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternCo-purification | FSW = 0.2478
| Unknown | MLH3 (MUTL PROTEIN HOMOLOG 3) ATP BINDING / MISMATCHED DNA BINDING |
AT4G36050 | PredictedPhenotypic Enhancement | FSW = 0.0412
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT5G04800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1787
| Unknown | 40S RIBOSOMAL PROTEIN S17 (RPS17D) |
AT5G13480 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.1169
| Unknown | FY PROTEIN BINDING |
AT1G06790 | Predictedtwo hybrid | FSW = 0.0098
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
AT1G13580 | PredictedPhenotypic Enhancement | FSW = 0.0551
| Unknown | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) |
AT1G77780 | PredictedAffinity Capture-Western | FSW = 0.1693
| Unknown | GLYCOSYL HYDROLASE FAMILY 17 PROTEIN |
AT2G37420 | PredictedPhenotypic Enhancement | FSW = 0.0780
| Unknown | KINESIN MOTOR PROTEIN-RELATED |
AT2G41340 | PredictedPhenotypic Suppression | FSW = 0.0101
| Unknown | RPB5D (RNA POLYMERASE II FIFTH LARGEST SUBUNIT D) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G22290 | PredictedPhenotypic Enhancement | FSW = 0.0705
| Unknown | UNKNOWN PROTEIN |
AT3G60860 | PredictedAffinity Capture-MS | FSW = 0.0089
| Unknown | GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN |
AT4G17610 | PredictedAffinity Capture-MS | FSW = 0.0523
| Unknown | TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN |
AT5G13860 | PredictedPhenotypic Enhancement | FSW = 0.0779
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G14060 | PredictedPhenotypic Enhancement | FSW = 0.0807
| Unknown | CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE |
AT5G16170 | PredictedPhenotypic Enhancement | FSW = 0.0268
| Unknown | UNKNOWN PROTEIN |
AT5G41700 | PredictedPhenotypic Enhancement | FSW = 0.0184
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G44830 | PredictedPhenotypic Enhancement | FSW = 0.0924
| Unknown | GLYCOSIDE HYDROLASE FAMILY 28 PROTEIN / POLYGALACTURONASE (PECTINASE) FAMILY PROTEIN |
AT3G47300 | PredictedPhylogenetic profile method | FSW = 0.0157
| Unknown | SELT (SELT-LIKE PROTEIN PRECURSOR) SELENIUM BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454