Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G59180 - ( NRPB7 DNA-directed RNA polymerase/ RNA binding )
28 Proteins interacs with AT5G59180Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G12610 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3448
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN |
AT4G35800 | PredictedCo-crystal StructureCo-crystal StructureAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSCo-purificationfar western blottingReconstituted Complexinteraction prediction | FSW = 0.2723
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G37620 | Predictedtwo hybridReconstituted Complex | FSW = 0.0178
| Unknown | ACT1 (ACTIN 1) STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G16300 | Predictedtwo hybridReconstituted Complex | FSW = 0.0882
| Unknown | GAPCP-2 NAD OR NADH BINDING / BINDING / CATALYTIC/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT3G12480 | PredictedSynthetic Rescue | FSW = 0.0700
| Unknown | NF-YC11 (NUCLEAR FACTOR Y SUBUNIT C11) DNA BINDING / TRANSCRIPTION FACTOR |
AT5G09920 | Predictedinteraction predictiontwo hybridtwo hybridtwo hybridtwo hybridReconstituted Complexinterologs mappinginterologs mappinginterologs mappingCo-purificationCo-crystal StructureCo-crystal StructureCo-crystal StructureAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationReconstituted Complexinterologs mappingSynthetic Lethalitytwo hybridEnriched domain pairCo-expression | FSW = 0.6128
| Unknown | NRPB4 DNA-DIRECTED RNA POLYMERASE |
AT3G16980 | PredictedCo-purificationAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-MSinteraction prediction | FSW = 0.4777
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT3G13445 | PredictedReconstituted Complex | FSW = 0.0146
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT2G15430 | PredictedCo-purificationCo-purificationAffinity Capture-WesternAffinity Capture-MSCo-purificationAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationAffinity Capture-WesternReconstituted Complexinteraction prediction | FSW = 0.2940
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT4G08350 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1720
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G34210 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1877
| Unknown | STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION INITIATION FACTOR |
AT1G75510 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3996
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT4G21710 | PredictedAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSfar western blottinginteraction prediction | FSW = 0.4368
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G52090 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.6779
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G61700 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.4545
| Unknown | DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10) |
AT2G15400 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.5442
| Unknown | NRPE3B DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT1G05180 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0061
| Unknown | AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME |
AT5G41910 | PredictedAffinity Capture-MS | FSW = 0.3798
| Unknown | RNA POLYMERASE II MEDIATOR COMPLEX PROTEIN-RELATED |
AT5G51940 | Predictedin vitroAffinity Capture-MSAffinity Capture-MSfar western blottingCo-purificationCo-expression | FSW = 0.4447
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G54250 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purificationinteraction prediction | FSW = 0.5630
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
AT3G22320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.4732
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G44150 | PredictedAffinity Capture-MS | FSW = 0.1447
| Unknown | ASHH3 (HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3) HISTONE-LYSINE N-METHYLTRANSFERASE |
AT5G63670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2251
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT5G41010 | PredictedAffinity Capture-MS | FSW = 0.4551
| Unknown | NRPB12 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G58003 | PredictedAffinity Capture-MS | FSW = 0.4833
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
AT1G11475 | PredictedAffinity Capture-MS | FSW = 0.4352
| Unknown | NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G08565 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2241
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
AT2G04630 | PredictedAffinity Capture-MS | FSW = 0.5057
| Unknown | NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454