Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G59230 - ( transcription factor-related )

12 Proteins interacs with AT5G59230
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G20290

Predicted

two hybrid

FSW = 0.0177

Class C:

nucleus

 40S RIBOSOMAL PROTEIN S8 (RPS8A)
AT4G12610

Predicted

in vitro

FSW = 0.1010

Class C:

nucleus

 TRANSCRIPTION INITIATION FACTOR IIF ALPHA SUBUNIT (TFIIF-ALPHA) FAMILY PROTEIN
AT3G05560

Predicted

two hybrid

FSW = 0.0242

Class C:

nucleus

 60S RIBOSOMAL PROTEIN L22-2 (RPL22B)
AT1G03280

Predicted

in vitro

FSW = 0.1994

Class C:

nucleus

 TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN
AT4G24440

Predicted

in vitro

in vitro

two hybrid

in vitro

in vivo

FSW = 0.1298

Class C:

nucleus

 TRANSCRIPTION INITIATION FACTOR IIA GAMMA CHAIN / TFIIA-GAMMA (TFIIA-S)
AT2G41630

Predicted

in vitro

in vivo

FSW = 0.0959

Class C:

nucleus

 TFIIB (TRANSCRIPTION FACTOR II B) RNA POLYMERASE II TRANSCRIPTION FACTOR/ PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TRANSLATION INITIATION FACTOR/ ZINC ION BINDING
AT1G02680

Predicted

two hybrid

FSW = 0.0086

Class C:

nucleus

 TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT3G02560

Predicted

two hybrid

FSW = 0.0344

Unknown

 40S RIBOSOMAL PROTEIN S7 (RPS7B)
AT5G59160

Predicted

two hybrid

FSW = 0.0441

Unknown

 TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE
AT1G36240

Predicted

two hybrid

FSW = 0.0267

Unknown

 60S RIBOSOMAL PROTEIN L30 (RPL30A)
AT4G20330

Predicted

in vitro

in vitro

FSW = 0.1502

Unknown

 TRANSCRIPTION INITIATION FACTOR-RELATED
AT3G47610

Predicted

in vitro

FSW = 0.0218

Unknown

 TRANSCRIPTION REGULATOR/ ZINC ION BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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