Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G59290 - ( UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE 3) UDP-glucuronate decarboxylase/ catalytic )

9 Proteins interacs with AT5G59290
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G28760

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5724

Unknown

NAD-DEPENDENT EPIMERASE/DEHYDRATASE FAMILY PROTEIN
AT1G12780

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.6644

Unknown

UGE1 (UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 1) UDP-GLUCOSE 4-EPIMERASE/ PROTEIN DIMERIZATION
AT3G08730

Predicted

in vitro

two hybrid

FSW = 0.0101

Unknown

PK1 (PROTEIN-SERINE KINASE 1) KINASE/ PROTEIN BINDING / PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G46440

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5471

Unknown

UXS5 UDP-GLUCURONATE DECARBOXYLASE/ CATALYTIC
AT1G63180

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6001

Unknown

UGE3 (UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 3) UDP-GLUCOSE 4-EPIMERASE/ PROTEIN DIMERIZATION
AT4G23920

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5267

Unknown

UGE2 (UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 2) UDP-GLUCOSE 4-EPIMERASE/ PROTEIN DIMERIZATION
AT1G64440

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6001

Unknown

RHD1 (ROOT HAIR DEFECTIVE 1) UDP-GLUCOSE 4-EPIMERASE/ PROTEIN DIMERIZATION
AT4G20460

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.6306

Unknown

NAD-DEPENDENT EPIMERASE/DEHYDRATASE FAMILY PROTEIN
AT4G35450

Predicted

Gene fusion method

FSW = 0.0370

Unknown

AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2) PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454