Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G59410 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Rab5-interacting (InterProIPR010742) BEST Arabidopsis thaliana protein match is Rab5-interacting family protein (TAIRAT2G290201) Has 154 Blast hits to 154 proteins in 67 species Archae - 0 Bacteria - 0 Metazoa - 108 Fungi - 0 Plants - 26 Viruses - 0 Other Eukaryotes - 20 (source NCBI BLink) )

17 Proteins interacs with AT5G59410
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G64790Predicted

Affinity Capture-MS

FSW = 0.0088

Unknown

BINDING
AT5G16930

Predicted

Affinity Capture-MS

FSW = 0.0889

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT5G22500

Predicted

Affinity Capture-MS

FSW = 0.0889

Unknown

FAR1 (FATTY ACID REDUCTASE 1) FATTY ACYL-COA REDUCTASE (ALCOHOL-FORMING)/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS
AT1G75990

Predicted

Affinity Capture-MS

FSW = 0.0145

Unknown

26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3)
AT4G02450

Predicted

Affinity Capture-MS

FSW = 0.0242

Unknown

GLYCINE-RICH PROTEIN
AT4G39850

Predicted

Affinity Capture-MS

FSW = 0.0500

Unknown

PXA1 (PEROXISOMAL ABC TRANSPORTER 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES
AT2G42520

Predicted

Affinity Capture-MS

FSW = 0.0190

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT4G36480

Predicted

Affinity Capture-MS

FSW = 0.0400

Unknown

ATLCB1 (LONG-CHAIN BASE1) PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE
AT1G15200

Predicted

two hybrid

two hybrid

FSW = 0.0400

Unknown

PROTEIN-PROTEIN INTERACTION REGULATOR FAMILY PROTEIN
AT5G09230

Predicted

two hybrid

two hybrid

FSW = 0.0229

Unknown

SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING
AT1G33360

Predicted

Affinity Capture-MS

FSW = 0.0889

Unknown

ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX PUTATIVE
AT3G08960Predicted

Affinity Capture-MS

FSW = 0.0533

Unknown

BINDING / PROTEIN TRANSPORTER
AT5G06120

Predicted

Affinity Capture-MS

FSW = 0.1600

Unknown

RAN-BINDING PROTEIN PUTATIVE
AT5G49110

Predicted

Affinity Capture-MS

FSW = 0.0800

Unknown

UNKNOWN PROTEIN
AT5G49840

Predicted

Affinity Capture-MS

FSW = 0.0615

Unknown

ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT5G62600

Predicted

Affinity Capture-MS

FSW = 0.0276

Unknown

TRANSPORTIN-SR-RELATED
AT2G29020

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0356

Unknown

RAB5-INTERACTING FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454