Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G59410 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown LOCATED IN cellular_component unknown EXPRESSED IN 22 plant structures EXPRESSED DURING 13 growth stages CONTAINS InterPro DOMAIN/s Rab5-interacting (InterProIPR010742) BEST Arabidopsis thaliana protein match is Rab5-interacting family protein (TAIRAT2G290201) Has 154 Blast hits to 154 proteins in 67 species Archae - 0 Bacteria - 0 Metazoa - 108 Fungi - 0 Plants - 26 Viruses - 0 Other Eukaryotes - 20 (source NCBI BLink) )
17 Proteins interacs with AT5G59410Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G64790 | PredictedAffinity Capture-MS | FSW = 0.0088
| Unknown | BINDING |
AT5G16930 | PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT5G22500 | PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | FAR1 (FATTY ACID REDUCTASE 1) FATTY ACYL-COA REDUCTASE (ALCOHOL-FORMING)/ OXIDOREDUCTASE ACTING ON THE CH-CH GROUP OF DONORS |
AT1G75990 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | 26S PROTEASOME REGULATORY SUBUNIT S3 PUTATIVE (RPN3) |
AT4G02450 | PredictedAffinity Capture-MS | FSW = 0.0242
| Unknown | GLYCINE-RICH PROTEIN |
AT4G39850 | PredictedAffinity Capture-MS | FSW = 0.0500
| Unknown | PXA1 (PEROXISOMAL ABC TRANSPORTER 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
AT2G42520 | PredictedAffinity Capture-MS | FSW = 0.0190
| Unknown | DEAD BOX RNA HELICASE PUTATIVE |
AT4G36480 | PredictedAffinity Capture-MS | FSW = 0.0400
| Unknown | ATLCB1 (LONG-CHAIN BASE1) PROTEIN BINDING / SERINE C-PALMITOYLTRANSFERASE |
AT1G15200 | Predictedtwo hybridtwo hybrid | FSW = 0.0400
| Unknown | PROTEIN-PROTEIN INTERACTION REGULATOR FAMILY PROTEIN |
AT5G09230 | Predictedtwo hybridtwo hybrid | FSW = 0.0229
| Unknown | SRT2 (SIRTUIN 2) DNA BINDING / NAD OR NADH BINDING / NAD-DEPENDENT HISTONE DEACETYLASE/ ZINC ION BINDING |
AT1G33360 | PredictedAffinity Capture-MS | FSW = 0.0889
| Unknown | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX PUTATIVE |
AT3G08960 | PredictedAffinity Capture-MS | FSW = 0.0533
| Unknown | BINDING / PROTEIN TRANSPORTER |
AT5G06120 | PredictedAffinity Capture-MS | FSW = 0.1600
| Unknown | RAN-BINDING PROTEIN PUTATIVE |
AT5G49110 | PredictedAffinity Capture-MS | FSW = 0.0800
| Unknown | UNKNOWN PROTEIN |
AT5G49840 | PredictedAffinity Capture-MS | FSW = 0.0615
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT5G62600 | PredictedAffinity Capture-MS | FSW = 0.0276
| Unknown | TRANSPORTIN-SR-RELATED |
AT2G29020 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0356
| Unknown | RAB5-INTERACTING FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454