Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G59720 - ( HSP182 (heat shock protein 182) )
18 Proteins interacs with AT5G59720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G09590 | PredictedSynthetic Lethality | FSW = 0.0121
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0101
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT1G16030 | PredictedAffinity Capture-Western | FSW = 0.0824
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT5G03650 | PredictedSynthetic Lethality | FSW = 0.0535
| Unknown | SBE22 (STARCH BRANCHING ENZYME 22) 14-ALPHA-GLUCAN BRANCHING ENZYME |
AT5G47510 | PredictedSynthetic Lethality | FSW = 0.1068
| Unknown | SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN |
AT5G04990 | Predictedtwo hybrid | FSW = 0.0496
| Unknown | SAD1/UNC-84 PROTEIN-RELATED |
AT1G53540 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.1254
| Unknown | 176 KDA CLASS I SMALL HEAT SHOCK PROTEIN (HSP176C-CI) (AA 1-156) |
AT5G12840 | Predictedinterologs mappingsynthetic growth defect | FSW = 0.0682
| Unknown | NF-YA1 (NUCLEAR FACTOR Y SUBUNIT A1) TRANSCRIPTION FACTOR |
AT5G63960 | Predictedinterologs mapping | FSW = 0.0897
| Unknown | EMB2780 (EMBRYO DEFECTIVE 2780) DNA BINDING / DNA-DIRECTED DNA POLYMERASE/ NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G46230 | PredictedShared biological functionPhylogenetic profile method | FSW = 0.1341
| Unknown | ATHSP174 |
AT1G34340 | PredictedSynthetic Lethality | FSW = 0.1281
| Unknown | ESTERASE/LIPASE/THIOESTERASE FAMILY PROTEIN |
AT2G30650 | Predictedinterologs mapping | FSW = 0.1126
| Unknown | CATALYTIC |
AT3G15470 | PredictedSynthetic Lethality | FSW = 0.0317
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT4G16360 | Predictedsynthetic growth defectsynthetic growth defectinterologs mappinginterologs mappingsynthetic growth defect | FSW = 0.0546
| Unknown | AMP-ACTIVATED PROTEIN KINASE |
AT5G05070 | PredictedSynthetic Lethality | FSW = 0.0481
| Unknown | ZINC ION BINDING |
AT1G55810 | PredictedSynthetic Lethality | FSW = 0.1005
| Unknown | URACIL PHOSPHORIBOSYLTRANSFERASE PUTATIVE / UMP PYROPHOSPHORYLASE PUTATIVE / UPRTASE PUTATIVE |
AT5G45190 | Predictedtwo hybrid | FSW = 0.0127
| Unknown | CYCLIN FAMILY PROTEIN |
AT1G07400 | PredictedPhylogenetic profile method | FSW = 0.1113
| Unknown | 178 KDA CLASS I HEAT SHOCK PROTEIN (HSP178-CI) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454