Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Welcome to AtPIN
AtPIN will be upgraded. Please send your suggestions here
AT5G60040 - ( NRPC1 DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding / zinc ion binding )
32 Proteins interacs with AT5G60040| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G18080
   | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0156
| Unknown | ATARCA NUCLEOTIDE BINDING |
| AT1G07790
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0279
| Unknown | HTB1 DNA BINDING |
| AT4G07950
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pair | FSW = 0.2973
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
| AT1G18270
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0667
| Unknown | KETOSE-BISPHOSPHATE ALDOLASE CLASS-II FAMILY PROTEIN |
| AT3G16980
| Predictedtwo hybridinteraction prediction | FSW = 0.1208
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
| AT1G01210
| PredictedAffinity Capture-MSAffinity Capture-MSEnriched domain pair | FSW = 0.1420
| Unknown | DNA-DIRECTED RNA POLYMERASE III FAMILY PROTEIN |
| AT3G54280
| PredictedAffinity Capture-MS | FSW = 0.1156
| Unknown | RGD3 (ROOT GROWTH DEFECTIVE 3) ATP BINDING / DNA BINDING / BINDING / HELICASE/ NUCLEIC ACID BINDING |
| AT5G44200
| PredictedSynthetic LethalityCo-expression | FSW = 0.0097
| Unknown | CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING |
| AT3G18130
| PredictedAffinity Capture-MS | FSW = 0.0123
| Unknown | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C) NUCLEOTIDE BINDING |
| AT2G47620
| PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0358
| Unknown | ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING |
| AT1G07370
| PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0132
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
| AT2G37470
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0112
| Unknown | HISTONE H2B PUTATIVE |
| AT4G39160
| PredictedAffinity Capture-MS | FSW = 0.0106
| Unknown | DNA BINDING / TRANSCRIPTION FACTOR |
| AT5G18620
| PredictedAffinity Capture-MS | FSW = 0.1041
| Unknown | CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING |
| AT4G26840
| PredictedAffinity Capture-MSCo-expression | FSW = 0.0241
| Unknown | SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG |
| AT1G61700
| PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2683
| Unknown | DNA-DIRECTED RNA POLYMERASE II PUTATIVE (RPB10) |
| AT2G29540
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.0883
| Unknown | ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT5G59160
| Predictedtwo hybrid | FSW = 0.0333
| Unknown | TOPP2 PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT5G49530
| Predictedin vivoin vitro | FSW = 0.0914
| Unknown | SIN-LIKE FAMILY PROTEIN |
| AT1G06790
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2034
| Unknown | RNA POLYMERASE RPB7 N-TERMINAL DOMAIN-CONTAINING PROTEIN |
| AT1G54250
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pair | FSW = 0.2882
| Unknown | NRPB8A DNA-DIRECTED RNA POLYMERASE |
| AT1G60620
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.1574
| Unknown | ATRPAC43 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
| AT3G22320
| Predictedtwo hybridAffinity Capture-MSAffinity Capture-MStwo hybridAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.1934
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G13240
| PredictedSynthetic Rescueinterologs mappingAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSSynthetic RescueAffinity Capture-MSAffinity Capture-WesternReconstituted ComplexAffinity Capture-MSinteraction prediction | FSW = 0.1846
| Unknown | TRANSCRIPTION REGULATOR |
| AT5G45140
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.4887
| Unknown | NRPC2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
| AT5G51940
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionEnriched domain pairCo-expression | FSW = 0.2578
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT2G17510
| PredictedAffinity Capture-MS | FSW = 0.0742
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
| AT3G18860
| PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0193
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
| AT2G04630
| PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.3122
| Unknown | NRPB6B DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT1G11475
| PredictedAffinity Capture-MS | FSW = 0.2558
| Unknown | NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT4G11240
| Predictedtwo hybridCo-expression | FSW = 0.0500
| Unknown | TOPP7 PROTEIN SERINE/THREONINE PHOSPHATASE |
| AT3G53650
| Predictedinteraction predictionCo-expression | FSW = 0.0393
| Unknown | HISTONE H2B PUTATIVE |
Downloads
Quick help
Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
AtPIN is built and maintained by the System and Integrative Biology Laboratory of CBMEG / UNICAMPTAIR | Report a bug | Roadmap | This is AtPIN version 2.6.71
This page takes 0.502 seconds to be build.
This page takes 0.502 seconds to be build.