Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G60210 - ( LOCATED IN plasma membrane EXPRESSED IN 22 plant structures EXPRESSED DURING 12 growth stages BEST Arabidopsis thaliana protein match is myosin heavy chain-related (TAIRAT2G370801) Has 77946 Blast hits to 39215 proteins in 1793 species Archae - 845 Bacteria - 8877 Metazoa - 39997 Fungi - 6049 Plants - 2988 Viruses - 248 Other Eukaryotes - 18942 (source NCBI BLink) )

9 Proteins interacs with AT5G60210
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G51300

Experimental

two hybrid

FSW = 0.0230

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

mitochondrion (p = 0.82)

ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING
AT5G11670

Predicted

Gene fusion method

FSW = 0.1381

Class C:

plasma membrane

ATNADP-ME2 (NADP-MALIC ENZYME 2) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT1G25490

Predicted

Gene fusion method

FSW = 0.0745

Class C:

plasma membrane

RCN1 (ROOTS CURL IN NPA) PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT3G19480

Predicted

Gene fusion method

FSW = 0.0529

Unknown

D-3-PHOSPHOGLYCERATE DEHYDROGENASE PUTATIVE / 3-PGDH PUTATIVE
AT5G52630

Predicted

Gene fusion method

FSW = 0.0482

Unknown

MEF1 (MITOCHONDRIAL RNA EDITING FACTOR 1)
AT5G25880

Predicted

Gene fusion method

FSW = 0.1233

Unknown

ATNADP-ME3 (NADP-MALIC ENZYME 3) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT1G05480Predicted

Gene fusion method

FSW = 0.0482

Unknown

ATNADP-ME3 (NADP-MALIC ENZYME 3) MALATE DEHYDROGENASE (OXALOACETATE-DECARBOXYLATING) (NADP+)/ MALIC ENZYME/ OXIDOREDUCTASE ACTING ON NADH OR NADPH NAD OR NADP AS ACCEPTOR
AT5G38240Predicted

Gene fusion method

FSW = 0.0482

Unknown

SERINE/THREONINE PROTEIN KINASE PUTATIVE
AT3G52115

Predicted

Gene fusion method

FSW = 0.0697

Unknown

ATGR1 (ARABIDOPSIS THALIANA GAMMA RESPONSE GENE 1)

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454