Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G60640 - ( ATPDIL1-4 (PDI-LIKE 1-4) protein disulfide isomerase )
35 Proteins interacs with AT5G60640| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G77510
   | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3920
| Class C:vacuoleplastidendoplasmic reticulum | ATPDIL1-2 (PDI-LIKE 1-2) PROTEIN DISULFIDE ISOMERASE |
| AT3G54960
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1189
| Class C:vacuoleplastidendoplasmic reticulum | ATPDIL1-3 (PDI-LIKE 1-3) PROTEIN DISULFIDE ISOMERASE |
| AT1G72730
| PredictedAffinity Capture-MS | FSW = 0.0235
| Class C:vacuole | EUKARYOTIC TRANSLATION INITIATION FACTOR 4A PUTATIVE / EIF-4A PUTATIVE |
| AT5G10350
| PredictedAffinity Capture-MS | FSW = 0.0037
| Class C:vacuole | POLYADENYLATE-BINDING PROTEIN FAMILY PROTEIN / PABP FAMILY PROTEIN |
| AT5G63840
| Predictedinterologs mappingCo-expression | FSW = 0.0519
| Class C:plastidendoplasmic reticulum | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
| AT1G21750
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1161
| Class C:plastidendoplasmic reticulum | ATPDIL1-1 (PDI-LIKE 1-1) PROTEIN DISULFIDE ISOMERASE |
| AT1G03475
| PredictedAffinity Capture-MS | FSW = 0.0486
| Class C:plastid | LIN2 (LESION INITIATION 2) COPROPORPHYRINOGEN OXIDASE |
| AT5G63110
| Predictedtwo hybridShared biological functionCo-expression | FSW = 0.0039
| Class C:plastid | HDA6 (HISTONE DEACETYLASE 6) HISTONE DEACETYLASE |
| AT1G12230
| Predictedtwo hybrid | FSW = 0.0577
| Class C:plastid | TRANSALDOLASE PUTATIVE |
| AT3G52150
| PredictedAffinity Capture-MS | FSW = 0.0225
| Class C:plastid | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
| AT5G23630
| Predictedinterologs mapping | FSW = 0.0430
| Class C:endoplasmic reticulum | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
| AT2G17520
| Predictedinterologs mapping | FSW = 0.0475
| Class C:endoplasmic reticulum | IRE1A ENDORIBONUCLEASE/ KINASE |
| AT3G16110
| PredictedPhylogenetic profile methodCo-expression | FSW = 0.1214
| Class C:endoplasmic reticulum | ATPDIL1-6 (PDI-LIKE 1-6) PROTEIN DISULFIDE ISOMERASE |
| AT2G38960
| Predictedin vivoin vivo | FSW = 0.0277
| Class C:endoplasmic reticulum | AERO2 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 2) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
| AT1G72280
| PredictedAffinity Capture-Western | FSW = 0.0839
| Class C:endoplasmic reticulum | AERO1 (ARABIDOPSIS ENDOPLASMIC RETICULUM OXIDOREDUCTINS 1) FAD BINDING / ELECTRON CARRIER/ OXIDOREDUCTASE ACTING ON SULFUR GROUP OF DONORS DISULFIDE AS ACCEPTOR / PROTEIN BINDING |
| AT5G18900
| Predictedin vivo | FSW = 0.1053
| Unknown | OXIDOREDUCTASE 2OG-FE(II) OXYGENASE FAMILY PROTEIN |
| AT1G65040
| Predictedinterologs mapping | FSW = 0.0428
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
| AT3G13920
| PredictedAffinity Capture-MS | FSW = 0.0284
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
| AT5G12840
| Predictedtwo hybrid | FSW = 0.0183
| Unknown | NF-YA1 (NUCLEAR FACTOR Y SUBUNIT A1) TRANSCRIPTION FACTOR |
| AT1G04980
| Predictedinterologs mappinginterologs mapping | FSW = 0.0318
| Unknown | ATPDIL2-2 (PDI-LIKE 2-2) PROTEIN DISULFIDE ISOMERASE |
| AT4G02570
| PredictedAffinity Capture-MS | FSW = 0.0097
| Unknown | ATCUL1 (ARABIDOPSIS THALIANA CULLIN 1) PROTEIN BINDING |
| AT4G00560
| Predictedtwo hybrid | FSW = 0.0421
| Unknown | METHIONINE ADENOSYLTRANSFERASE REGULATORY BETA SUBUNIT-RELATED |
| AT4G17760
| Predictedtwo hybrid | FSW = 0.0150
| Unknown | DAMAGED DNA BINDING / EXODEOXYRIBONUCLEASE III |
| AT1G15830
| Predictedin vitroAffinity Capture-MS | FSW = 0.0602
| Unknown | UNKNOWN PROTEIN |
| AT2G17190
| Predictedtwo hybridin vivoin vitroAffinity Capture-MS | FSW = 0.0111
| Unknown | UBIQUITIN FAMILY PROTEIN |
| AT2G17200
| PredictedAffinity Capture-MSin vitroin vivotwo hybrid | FSW = 0.0440
| Unknown | UBIQUITIN FAMILY PROTEIN |
| AT5G19090
| Predictedin vitroin vivoAffinity Capture-MS | FSW = 0.0111
| Unknown | HEAVY-METAL-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
| AT5G09390
| PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | CD2-BINDING PROTEIN-RELATED |
| AT5G43710
| PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
| AT2G23080
| PredictedAffinity Capture-MS | FSW = 0.0048
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
| AT2G18240
| Predictedinterologs mapping | FSW = 0.0552
| Unknown | RER1 PROTEIN PUTATIVE |
| AT1G24320
| Predictedinterologs mapping | FSW = 0.0342
| Unknown | ALPHA-GLUCOSIDASE PUTATIVE |
| AT4G35810 | Predictedin vivo | FSW = 0.0702
| Unknown | OXIDOREDUCTASE 2OG-FE(II) OXYGENASE FAMILY PROTEIN |
| AT2G21090
| PredictedGene fusion method | FSW = 0.0281
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
| AT2G06000
| PredictedGene fusion method | FSW = 0.0245
| Unknown | PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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