Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G60870 - ( regulator of chromosome condensation (RCC1) family protein )
42 Proteins interacs with AT5G60870Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G38510 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3263
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B PUTATIVE / V-ATPASE B SUBUNIT PUTATIVE / VACUOLAR PROTON PUMP B SUBUNIT PUTATIVE / V-ATPASE 57 KDA SUBUNIT PUTATIVE |
AT5G19320 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2228
| Unknown | RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2) RAN GTPASE ACTIVATOR |
AT3G49010 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0586
| Unknown | ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G12580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0524
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT3G28710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0248
| Unknown | H+-TRANSPORTING TWO-SECTOR ATPASE PUTATIVE |
AT3G22110 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0691
| Unknown | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G19860 | PredictedAffinity Capture-MS | FSW = 0.0145
| Unknown | HXK2 (HEXOKINASE 2) ATP BINDING / FRUCTOKINASE/ GLUCOKINASE/ HEXOKINASE |
AT3G62830 | PredictedGene fusion method | FSW = 0.0413
| Unknown | AUD1 UDP-GLUCURONATE DECARBOXYLASE/ CATALYTIC/ DTDP-GLUCOSE 46-DEHYDRATASE |
AT4G24400 | PredictedGene fusion method | FSW = 0.0753
| Unknown | CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE |
AT4G35310 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1093
| Unknown | CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5) ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G59950 | PredictedAffinity Capture-MS | FSW = 0.0676
| Unknown | RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE |
AT2G01940 | PredictedGene fusion method | FSW = 0.0421
| Unknown | NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING |
AT1G65440 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1372
| Unknown | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT2G18450 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0699
| Unknown | SDH1-2 SUCCINATE DEHYDROGENASE |
AT3G22880 | PredictedAffinity Capture-MS | FSW = 0.0179
| Unknown | DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT4G17190 | PredictedAffinity Capture-WesternSynthetic Lethality | FSW = 0.0251
| Unknown | FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2) DIMETHYLALLYLTRANSTRANSFERASE/ GERANYLTRANSTRANSFERASE |
AT1G30825 | PredictedAffinity Capture-MS | FSW = 0.0631
| Unknown | DIS2 (DISTORTED TRICHOMES 2) STRUCTURAL MOLECULE |
AT1G78960 | PredictedAffinity Capture-MS | FSW = 0.0349
| Unknown | ATLUP2 BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT1G78970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0797
| Unknown | LUP1 (LUPEOL SYNTHASE 1) BETA-AMYRIN SYNTHASE/ LUPEOL SYNTHASE |
AT2G03040 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0502
| Unknown | TRANSMEMBRANE PROTEIN-RELATED |
AT3G08650 | Predictedtwo hybridAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-Western | FSW = 0.3772
| Unknown | METAL TRANSPORTER FAMILY PROTEIN |
AT3G47940 | PredictedAffinity Capture-MS | FSW = 0.0735
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT4G31590 | PredictedAffinity Capture-MS | FSW = 0.0323
| Unknown | ATCSLC5 (CELLULOSE-SYNTHASE LIKE C5) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G32850 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1691
| Unknown | NPAP (NUCLEAR POLY(A) POLYMERASE) NUCLEOTIDYLTRANSFERASE/ PROTEIN BINDING |
AT5G16040 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0753
| Unknown | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN |
AT5G17000 | PredictedAffinity Capture-MSPhenotypic Enhancement | FSW = 0.0662
| Unknown | NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE |
AT5G20560 | PredictedAffinity Capture-MS | FSW = 0.0077
| Unknown | BETA-13-GLUCANASE PUTATIVE |
AT5G40530 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSCo-purification | FSW = 0.3439
| Unknown | EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S METHYLTRANSFERASE-RELATED (INTERPROIPR007823) HAS 293 BLAST HITS TO 293 PROTEINS IN 141 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 93 FUNGI - 88 PLANTS - 22 VIRUSES - 0 OTHER EUKARYOTES - 90 (SOURCE NCBI BLINK) |
AT5G57890 | PredictedAffinity Capture-MS | FSW = 0.0420
| Unknown | ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE |
AT1G07340 | PredictedGene fusion method | FSW = 0.0267
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G48040 | PredictedGene fusion method | FSW = 0.0690
| Unknown | CATALYTIC/ PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G10930 | PredictedGene fusion method | FSW = 0.0567
| Unknown | CIPK5 (CBL-INTERACTING PROTEIN KINASE 5) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G24850 | PredictedGene fusion method | FSW = 0.0473
| Unknown | TAT3 (TYROSINE AMINOTRANSFERASE 3) L-TYROSINE2-OXOGLUTARATE AMINOTRANSFERASE/ TRANSAMINASE |
AT3G62260 | PredictedGene fusion method | FSW = 0.0730
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G67820 | PredictedGene fusion method | FSW = 0.0413
| Unknown | PROTEIN PHOSPHATASE 2C PUTATIVE / PP2C PUTATIVE |
AT1G49600 | PredictedGene fusion method | FSW = 0.3744
| Unknown | ATRBP47A (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A) RNA BINDING |
AT2G30940 | PredictedGene fusion method | FSW = 0.0437
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT2G25220 | PredictedGene fusion method | FSW = 0.0413
| Unknown | ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT1G55680 | PredictedGene fusion method | FSW = 0.0413
| Unknown | WD-40 REPEAT FAMILY PROTEIN |
AT4G26050 | PredictedGene fusion method | FSW = 0.1859
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT1G16250 | PredictedGene fusion method | FSW = 0.0429
| Unknown | KELCH REPEAT-CONTAINING F-BOX FAMILY PROTEIN |
AT4G10720 | PredictedGene fusion method | FSW = 0.0421
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454