Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G60980 - ( nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein )
55 Proteins interacs with AT5G60980Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G25150 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0161
| Class C:nucleus | NUCLEAR TRANSPORT FACTOR 2 (NTF2) FAMILY PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT4G25340 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1133
| Class C:nucleus | IMMUNOPHILIN-RELATED / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
AT2G17360 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0476
| Unknown | 40S RIBOSOMAL PROTEIN S4 (RPS4A) |
AT5G09590 | PredictedPhenotypic Enhancement | FSW = 0.0588
| Unknown | MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING |
AT3G62870 | Predictedsynthetic growth defect | FSW = 0.0254
| Unknown | 60S RIBOSOMAL PROTEIN L7A (RPL7AB) |
AT5G24770 | PredictedAffinity Capture-MS | FSW = 0.0508
| Unknown | VSP2 (VEGETATIVE STORAGE PROTEIN 2) ACID PHOSPHATASE |
AT1G16030 | PredictedAffinity Capture-MS | FSW = 0.0146
| Unknown | HSP70B (HEAT SHOCK PROTEIN 70B) ATP BINDING |
AT1G11870 | PredictedReconstituted ComplexSynthetic Lethality | FSW = 0.0702
| Unknown | SRS (SERYL-TRNA SYNTHETASE) SERINE-TRNA LIGASE |
AT3G52150 | PredictedAffinity Capture-MS | FSW = 0.0254
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT1G19660 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.0566
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT5G51820 | PredictedPhenotypic Enhancement | FSW = 0.0862
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT1G22170 | Predictedco-fractionationCo-fractionationsynthetic growth defectAffinity Capture-MS | FSW = 0.0889
| Unknown | PHOSPHOGLYCERATE/BISPHOSPHOGLYCERATE MUTASE FAMILY PROTEIN |
AT4G36490 | PredictedSynthetic LethalityAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic LethalityReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternPhenotypic EnhancementSynthetic LethalityReconstituted Complexco-fractionationCo-fractionationsynthetic growth defectinterologs mapping | FSW = 0.4816
| Unknown | SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER |
AT3G45780 | PredictedReconstituted Complexinterologs mapping | FSW = 0.0113
| Unknown | PHOT1 (PHOTOTROPIN 1) FMN BINDING / BLUE LIGHT PHOTORECEPTOR/ KINASE/ PROTEIN BINDING / PROTEIN SERINE/THREONINE KINASE |
AT2G32670 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSPhenotypic Enhancement | FSW = 0.1650
| Unknown | ATVAMP725 |
AT5G45970 | PredictedPhenotypic Enhancement | FSW = 0.0041
| Unknown | ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING |
AT5G22780 | PredictedReconstituted ComplexPhenotypic Enhancement | FSW = 0.0774
| Unknown | ADAPTIN FAMILY PROTEIN |
AT4G18800 | PredictedSynthetic RescueSynthetic Lethality | FSW = 0.0800
| Unknown | ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D) GTP BINDING |
AT5G26340 | PredictedPhenotypic Enhancement | FSW = 0.0241
| Unknown | MSS1 CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ HEXOSEHYDROGEN SYMPORTER/ HIGH-AFFINITY HYDROGENGLUCOSE SYMPORTER/ SUGARHYDROGEN SYMPORTER |
AT2G20510 | PredictedAffinity Capture-MS | FSW = 0.0209
| Unknown | ATTIM44-1 PROTEIN-TRANSMEMBRANE TRANSPORTING ATPASE |
AT5G47630 | PredictedSynthetic Lethality | FSW = 0.0859
| Unknown | MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING |
AT2G14580 | PredictedSynthetic Lethality | FSW = 0.0082
| Unknown | ATPRB1 |
AT2G47990 | PredictedPhenotypic EnhancementAffinity Capture-Western | FSW = 0.0261
| Unknown | SWA1 (SLOW WALKER1) NUCLEOTIDE BINDING |
AT2G05170 | PredictedAffinity Capture-MS | FSW = 0.0784
| Unknown | ATVPS11 BINDING / PROTEIN BINDING / TRANSPORTER/ ZINC ION BINDING |
AT1G52300 | PredictedAffinity Capture-MS | FSW = 0.0631
| Unknown | 60S RIBOSOMAL PROTEIN L37 (RPL37B) |
AT3G13900 | PredictedAffinity Capture-WesternPhenotypic SuppressionReconstituted Complex | FSW = 0.0674
| Unknown | ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM |
AT5G53360 | Predictedtwo hybrid | FSW = 0.0120
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT3G60360 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.1635
| Unknown | EDA14 (EMBRYO SAC DEVELOPMENT ARREST 14) |
AT4G27070 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0918
| Unknown | TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2) TRYPTOPHAN SYNTHASE |
AT1G77990 | PredictedAffinity Capture-MS | FSW = 0.1129
| Unknown | AST56 SULFATE TRANSMEMBRANE TRANSPORTER |
AT4G16420 | PredictedSynthetic Rescue | FSW = 0.0391
| Unknown | ADA2B (HOMOLOG OF YEAST ADA2 2B) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR |
AT4G30890 | Predictedin vivoin vitroAffinity Capture-MS | FSW = 0.0265
| Unknown | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT1G26690 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1422
| Unknown | EMP24/GP25L/P24 FAMILY PROTEIN |
AT1G29970 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1514
| Unknown | RPL18AA (60S RIBOSOMAL PROTEIN L18A-1) |
AT1G34580 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1007
| Unknown | MONOSACCHARIDE TRANSPORTER PUTATIVE |
AT3G06483 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1102
| Unknown | PDK (PYRUVATE DEHYDROGENASE KINASE) ATP BINDING / HISTIDINE PHOSPHOTRANSFER KINASE/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) KINASE |
AT3G12200 | PredictedAffinity Capture-MSAffinity Capture-MSinterologs mappingAffinity Capture-MS | FSW = 0.1414
| Unknown | ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE |
AT3G22290 | Predictedsynthetic growth defect | FSW = 0.0632
| Unknown | UNKNOWN PROTEIN |
AT3G47610 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.0890
| Unknown | TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT4G19560 | PredictedPhenotypic Enhancement | FSW = 0.0845
| Unknown | CYCT12 CYCLIN-DEPENDENT PROTEIN KINASE |
AT4G27130 | PredictedPhenotypic Enhancementsynthetic growth defectPhenotypic Enhancement | FSW = 0.1175
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT5G01430 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1633
| Unknown | GOT1-LIKE FAMILY PROTEIN |
AT5G06600 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.1527
| Unknown | UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12) UBIQUITIN THIOLESTERASE/ UBIQUITIN-SPECIFIC PROTEASE |
AT5G13860 | PredictedSynthetic LethalityAffinity Capture-MS | FSW = 0.1685
| Unknown | ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE |
AT5G20340 | PredictedPhenotypic Enhancement | FSW = 0.1224
| Unknown | BG5 (BETA-13-GLUCANASE 5) GLUCAN 13-BETA-GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT2G14880 | PredictedAffinity Capture-MS | FSW = 0.0227
| Unknown | SWIB COMPLEX BAF60B DOMAIN-CONTAINING PROTEIN |
AT2G20290 | PredictedAffinity Capture-MS | FSW = 0.1167
| Unknown | XIG MOTOR/ PROTEIN BINDING |
AT2G31900 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1534
| Unknown | XIF MOTOR |
AT2G40930 | PredictedAffinity Capture-MS | FSW = 0.0860
| Unknown | UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5) UBIQUITIN-SPECIFIC PROTEASE |
AT4G21490 | PredictedSynthetic Lethality | FSW = 0.0556
| Unknown | NDB3 NADH DEHYDROGENASE |
AT4G33200 | PredictedAffinity Capture-MS | FSW = 0.0482
| Unknown | XI-I MOTOR/ PROTEIN BINDING |
AT5G05420 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0585
| Unknown | IMMUNOPHILIN PUTATIVE / FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE PUTATIVE |
AT5G14180 | PredictedAffinity Capture-MS | FSW = 0.1508
| Unknown | MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) CATALYTIC |
AT2G41980 | Predictedtwo hybrid | FSW = 0.0254
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT3G58040 | Predictedtwo hybrid | FSW = 0.0210
| Unknown | SINAT2 (SEVEN IN ABSENTIA OF ARABIDOPSIS 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454