Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G61000 - ( replication protein putative )
25 Proteins interacs with AT5G61000Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT2G06510 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0873
| Class C:nucleus | RPA1A (REPLICATION PROTEIN A 1A) DNA BINDING / NUCLEIC ACID BINDING |
AT3G02920 | Predictedin vivoin vitro | FSW = 0.2035
| Class C:nucleus | REPLICATION PROTEIN-RELATED |
AT1G44900 | Predictedtwo hybrid | FSW = 0.1683
| Class C:nucleus | ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE |
AT4G02060 | Predictedtwo hybrid | FSW = 0.1711
| Class C:nucleus | PRL (PROLIFERA) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT2G29570 | Predictedin vitro | FSW = 0.0281
| Class C:nucleus | PCNA2 (PROLIFERATING CELL NUCLEAR ANTIGEN 2) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR |
AT5G05520 | Predictedtwo hybrid | FSW = 0.0519
| Unknown | OUTER MEMBRANE OMP85 FAMILY PROTEIN |
AT1G59820 | Predictedtwo hybrid | FSW = 0.0095
| Unknown | ALA3 (AMINOPHOSPHOLIPID ATPASE3) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM / PHOSPHOLIPID TRANSPORTER |
AT5G47100 | Predictedinterologs mapping | FSW = 0.0444
| Unknown | CBL9 CALCIUM ION BINDING |
AT1G26840 | Predictedtwo hybrid | FSW = 0.1185
| Unknown | ORC6 (ORIGIN RECOGNITION COMPLEX PROTEIN 6) DNA BINDING |
AT2G37560 | Predictedtwo hybrid | FSW = 0.1443
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT5G40820 | PredictedProtein-peptide | FSW = 0.0889
| Unknown | ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE |
AT5G20850 | Predictedin vitroin vivo | FSW = 0.0291
| Unknown | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT2G16440 | Predictedtwo hybrid | FSW = 0.2092
| Unknown | DNA REPLICATION LICENSING FACTOR PUTATIVE |
AT3G05740 | Predictedin vitroReconstituted Complexbiochemical | FSW = 0.0688
| Unknown | RECQI1 (ARABIDOPSIS RECQ HELICASE L1) ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING |
AT5G44635 | Predictedtwo hybrid | FSW = 0.0763
| Unknown | MINICHROMOSOME MAINTENANCE FAMILY PROTEIN / MCM FAMILY PROTEIN |
AT3G02820 | PredictedAffinity Capture-WesternColocalization | FSW = 0.0612
| Unknown | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN |
AT4G12740 | Predictedin vivo | FSW = 0.0730
| Unknown | ADENINE-DNA GLYCOSYLASE-RELATED / MYH-RELATED |
AT5G51795 | Predictedco-fractionationCo-fractionation | FSW = 0.1241
| Unknown | KIN17 DNA-BINDING PROTEIN-RELATED |
AT1G07340 | Predictedtwo hybrid | FSW = 0.0117
| Unknown | ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
AT1G58340 | Predictedtwo hybrid | FSW = 0.0408
| Unknown | ZF14 ANTIPORTER/ DRUG TRANSPORTER/ TRANSPORTER |
AT1G59580 | Predictedtwo hybrid | FSW = 0.0063
| Unknown | ATMPK2 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2) MAP KINASE/ KINASE/ PROTEIN KINASE |
AT3G04710 | PredictedSynthetic Rescue | FSW = 0.0281
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
AT1G02100 | Predictedinterologs mapping | FSW = 0.0062
| Unknown | LEUCINE CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
AT2G32220 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.0593
| Unknown | 60S RIBOSOMAL PROTEIN L27 (RPL27A) |
AT3G62960 | PredictedAffinity Capture-MS | FSW = 0.0159
| Unknown | GLUTAREDOXIN FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454