Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G61010 - ( ATEXO70E2 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E2) protein binding )

45 Proteins interacs with AT5G61010
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G15090

Predicted

Affinity Capture-MS

FSW = 0.0255

Unknown

VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT3G47520

Predicted

Affinity Capture-MS

FSW = 0.0525

Unknown

MDH (MALATE DEHYDROGENASE) L-MALATE DEHYDROGENASE/ BINDING / CATALYTIC/ MALATE DEHYDROGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT5G09590

Predicted

Phenotypic Enhancement

FSW = 0.0612

Unknown

MTHSC70-2 (MITOCHONDRIAL HSP70 2) ATP BINDING
AT3G26590

Predicted

biochemical

FSW = 0.0355

Unknown

MATE EFFLUX FAMILY PROTEIN
AT3G62870

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0293

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G26030

Predicted

Affinity Capture-MS

FSW = 0.0118

Unknown

FC1 (FERROCHELATASE 1) FERROCHELATASE
AT5G09660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1280

Unknown

PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) MALATE DEHYDROGENASE
AT2G25140

Predicted

Affinity Capture-MS

FSW = 0.0278

Unknown

CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G21640

Predicted

Affinity Capture-MS

FSW = 0.0468

Unknown

NADK2 NAD+ KINASE/ CALMODULIN BINDING
AT3G56160Predicted

Affinity Capture-MS

FSW = 0.0615

Unknown

BILE ACIDSODIUM SYMPORTER
AT2G43030

Predicted

Affinity Capture-MS

FSW = 0.0589

Unknown

RIBOSOMAL PROTEIN L3 FAMILY PROTEIN
AT5G60540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1792

Unknown

PDX2 (PYRIDOXINE BIOSYNTHESIS 2) GLUTAMINASE/ GLUTAMINYL-TRNA SYNTHASE (GLUTAMINE-HYDROLYZING)/ PROTEIN HETERODIMERIZATION
AT2G21540

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0640

Unknown

SFH3 (SEC14-LIKE 3) PHOSPHATIDYLINOSITOL TRANSPORTER
AT1G04750

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1503

Unknown

VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)
AT2G32670

Predicted

Phenotypic Enhancement

FSW = 0.1091

Unknown

ATVAMP725
AT3G21620

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0565

Unknown

EARLY-RESPONSIVE TO DEHYDRATION PROTEIN-RELATED / ERD PROTEIN-RELATED
AT4G02450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1473

Unknown

GLYCINE-RICH PROTEIN
AT4G33090

Predicted

Phenotypic Enhancement

FSW = 0.0576

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT3G13445

Predicted

Phenotypic Enhancement

FSW = 0.0345

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT2G03870

Predicted

Affinity Capture-MS

FSW = 0.0111

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT3G20970

Predicted

Affinity Capture-MS

FSW = 0.0775

Unknown

NFU4 STRUCTURAL MOLECULE
AT2G30160

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1736

Unknown

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT4G39200

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1406

Unknown

40S RIBOSOMAL PROTEIN S25 (RPS25E)
AT1G62800

Predicted

Phenotypic Enhancement

FSW = 0.1168

Unknown

ASP4 (ASPARTATE AMINOTRANSFERASE 4) CATALYTIC/ PYRIDOXAL PHOSPHATE BINDING / TRANSAMINASE/ TRANSFERASE TRANSFERRING NITROGENOUS GROUPS
AT3G13900

Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF IONS PHOSPHORYLATIVE MECHANISM
AT1G09270

Predicted

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

Affinity Capture-MS

Co-purification

Affinity Capture-Western

Reconstituted Complex

Co-crystal Structure

biochemical

FSW = 0.2813

Unknown

IMPA-4 (IMPORTIN ALPHA ISOFORM 4) BINDING / PROTEIN TRANSPORTER
AT1G60730

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0596

Unknown

ALDO/KETO REDUCTASE FAMILY PROTEIN
AT2G15910

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2211

Unknown

CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN
AT2G20290

Predicted

Phenotypic Suppression

Affinity Capture-Western

FSW = 0.1361

Unknown

XIG MOTOR/ PROTEIN BINDING
AT4G31770

Predicted

two hybrid

FSW = 0.0147

Unknown

CALCINEURIN-LIKE PHOSPHOESTERASE FAMILY PROTEIN
AT5G14060

Predicted

Affinity Capture-MS

FSW = 0.1230

Unknown

CARAB-AK-LYS AMINO ACID BINDING / ASPARTATE KINASE
AT5G24840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1658

Unknown

TRNA (GUANINE-N7-)-METHYLTRANSFERASE
AT1G70290

Predicted

Affinity Capture-MS

FSW = 0.0186

Unknown

ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT2G04660

Predicted

Affinity Capture-MS

FSW = 0.0160

Unknown

APC2 UBIQUITIN PROTEIN LIGASE BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G37420

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1190

Unknown

KINESIN MOTOR PROTEIN-RELATED
AT2G47970

Predicted

Affinity Capture-MS

FSW = 0.0426

Unknown

NPL4 FAMILY PROTEIN
AT3G05960

Predicted

Affinity Capture-MS

FSW = 0.0339

Unknown

STP6 (SUGAR TRANSPORTER 6) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G12200

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1388

Unknown

ATNEK7 (NIMA-RELATED KINASE7) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT3G24010

Predicted

Affinity Capture-MS

FSW = 0.0529

Unknown

ING1 (INHIBITOR OF GROWTH 1) DNA BINDING / METHYLATED HISTONE RESIDUE BINDING
AT3G56200

Predicted

Affinity Capture-Western

FSW = 0.0816

Unknown

AMINO ACID TRANSPORTER FAMILY PROTEIN
AT4G04700

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0794

Unknown

CPK27 ATP BINDING / CALCIUM ION BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT5G13860

Predicted

Affinity Capture-Western

FSW = 0.1273

Unknown

ELC-LIKE (ELCH-LIKE) SMALL CONJUGATING PROTEIN LIGASE
AT5G19360

Predicted

Affinity Capture-MS

FSW = 0.0272

Unknown

CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G41700

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0769

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT3G29400

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0186

Unknown

ATEXO70E1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN E1) PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454