Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G61210 - ( SNAP33 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 33) SNAP receptor/ protein binding )
21 Proteins interacs with AT5G61210| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G11820
   | ExperimentalReconstituted Complexin vitro | FSW = 0.1800
| Class A:plasma membraneClass B:vacuoleplastidendosomecytosolClass D:plastid (p = 0.78)nucleus (p = 0.78) | SYP121 (SYNTAXIN OF PLANTS 121) SNAP RECEPTOR/ PROTEIN ANCHOR |
| AT1G12360
| Experimentalpull down | FSW = 0.0712
| Class A:plasma membraneClass B:vacuoleplastidcytosolClass D:nucleus (p = 0.78) | KEU (KEULE) PROTEIN TRANSPORTER |
| AT1G08560
| Experimentaltwo hybridReconstituted Complex | FSW = 0.0912
| Class A:plasma membraneClass B:plastidgolgiendosomecytosolcell plate | SYP111 (SYNTAXIN OF PLANTS 111) SNAP RECEPTOR |
| AT1G69120
| Experimental | FSW = 0.0145
| Class A:cytosolClass B:plastidplasma membranenucleusClass D:nucleus (p = 0.78) | AP1 (APETALA1) DNA BINDING / PROTEIN BINDING / PROTEIN HETERODIMERIZATION/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
| AT1G61290
| Predictedin vitroin vitroin vivoEnriched domain pairCo-expression | FSW = 0.2048
| Class C:plasma membranecytosol | SYP124 (SYNTAXIN OF PLANTS 124) SNAP RECEPTOR |
| AT3G56190
| Predictedtwo hybridAffinity Capture-Western | FSW = 0.1042
| Class C:plasma membrane | ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2) BINDING / SOLUBLE NSF ATTACHMENT PROTEIN |
| AT5G08080
| Predictedtwo hybridAffinity Capture-WesternAffinity Capture-MSin vitroin vitroin vivoin vitroin vitrotwo hybridtwo hybridin vitroin vivoin vitroin vivotwo hybridReconstituted Complex | FSW = 0.2180
| Class C:plasma membrane | SYP132 (SYNTAXIN OF PLANTS 132) SNAP RECEPTOR |
| AT4G12120
| PredictedAffinity Capture-MSin vitroin vivoEnriched domain pairCo-expression | FSW = 0.1848
| Class C:plasma membrane | SEC1B PROTEIN TRANSPORTER |
| AT4G15780
| PredictedAffinity Capture-MStwo hybridtwo hybridin vitroin vitroin vivoin vivoin vitroin vitroin vitroin vitrotwo hybridin vivoAffinity Capture-Western | FSW = 0.1905
| Class C:plasma membrane | ATVAMP724 |
| AT1G21630
| Predictedin vivoin vitrotwo hybrid | FSW = 0.1026
| Class C:plasma membrane | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
| AT1G61250
| PredictedAffinity Capture-MSin vivo | FSW = 0.2057
| Class C:plasma membrane | SC3 (SECRETORY CARRIER 3) TRANSMEMBRANE TRANSPORTER |
| AT2G20840
| Predictedin vivoAffinity Capture-MS | FSW = 0.2735
| Class C:plasma membrane | SECRETORY CARRIER MEMBRANE PROTEIN (SCAMP) FAMILY PROTEIN |
| AT1G13890
| PredictedPhenotypic SuppressionEnriched domain pairCo-expression | FSW = 0.2364
| Class C:cytosol | SNAP30 (SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FACTOR ADAPTOR PROTEIN 30) SNAP RECEPTOR |
| AT5G16830
| Predictedin vivoin vitro | FSW = 0.1172
| Unknown | SYP21 (SYNTAXIN OF PLANTS 21) SNAP RECEPTOR |
| AT5G11150
| Predictedin vitroReconstituted ComplexAffinity Capture-Western | FSW = 0.1543
| Unknown | ATVAMP713 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 713) |
| AT2G41100
| PredictedShared biological functionCo-expression | FSW = 0.0417
| Unknown | TCH3 (TOUCH 3) CALCIUM ION BINDING |
| AT1G28490
| Predictedin vivoin vitroAffinity Capture-MSEnriched domain pairCo-expression | FSW = 0.0842
| Unknown | SYP61 (SYNTAXIN OF PLANTS 61) SNAP RECEPTOR |
| AT5G05760
| PredictedReconstituted Complex | FSW = 0.0900
| Unknown | SYP31 (SYNTAXIN OF PLANTS 31) SNAP RECEPTOR |
| AT1G51740
| PredictedAffinity Capture-MS | FSW = 0.0800
| Unknown | SYP81 (SYNTAXIN OF PLANTS 81) SNAP RECEPTOR/ PROTEIN BINDING |
| AT2G26210
| Predictedin vivo | FSW = 0.0554
| Unknown | ANKYRIN REPEAT FAMILY PROTEIN |
| AT3G18370
| Predictedin vitro | FSW = 0.0800
| Unknown | ATSYTF |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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