Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G61290 - ( flavin-containing monooxygenase family protein / FMO family protein )

14 Proteins interacs with AT5G61290
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G45010

Experimental

FSW = 0.0769

Unknown

ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V)
AT2G38280

Experimental

FSW = 0.0952

Unknown

FAC1 (EMBRYONIC FACTOR1) AMP DEAMINASE
AT3G06290

Experimental

FSW = 0.0972

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SAC3/GANP/NIN1/MTS3/EIF-3 P25 (INTERPROIPR005062) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SAC3/GANP FAMILY PROTEIN (TAIRAT3G543801) HAS 1341 BLAST HITS TO 841 PROTEINS IN 168 SPECIES ARCHAE - 0 BACTERIA - 24 METAZOA - 448 FUNGI - 228 PLANTS - 85 VIRUSES - 0 OTHER EUKARYOTES - 556 (SOURCE NCBI BLINK)
AT2G19560

Experimental

two hybrid

FSW = 0.2000

Unknown

EER5 (ENHANCED ETHYLENE RESPONSE 5)
AT5G09510

Predicted

Affinity Capture-Western

co-fractionation

Co-fractionation

Co-purification

FSW = 0.1538

Unknown

40S RIBOSOMAL PROTEIN S15 (RPS15D)
AT1G80030

Predicted

Synthetic Lethality

FSW = 0.0181

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT1G19660

Predicted

Synthetic Lethality

FSW = 0.0200

Unknown

WOUND-RESPONSIVE FAMILY PROTEIN
AT1G12160

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5240

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G62540

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5240

Unknown

FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2) 3-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 4-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 5-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 7-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 8-METHYL
AT1G62570

Predicted

Gene fusion method

Phylogenetic profile method

Co-expression

FSW = 0.5240

Unknown

FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4) 4-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 8-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ FLAVIN-CONTAINING MONOOXYGENASE/ MONOOXYGENASE
AT5G07800

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4455

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G12140

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.3263

Unknown

FMO GS-OX5 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5) 8-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ FLAVIN-CONTAINING MONOOXYGENASE/ MONOOXYGENASE
AT1G12200

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.4402

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G65860

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.5240

Unknown

FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1) 3-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 4-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 5-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 6-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 7-METHYL

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454