Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G61290 - ( flavin-containing monooxygenase family protein / FMO family protein )
14 Proteins interacs with AT5G61290Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G45010 | Experimental | FSW = 0.0769
| Unknown | ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V) |
AT2G38280 | Experimental | FSW = 0.0952
| Unknown | FAC1 (EMBRYONIC FACTOR1) AMP DEAMINASE |
AT3G06290 | Experimental | FSW = 0.0972
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SAC3/GANP/NIN1/MTS3/EIF-3 P25 (INTERPROIPR005062) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS SAC3/GANP FAMILY PROTEIN (TAIRAT3G543801) HAS 1341 BLAST HITS TO 841 PROTEINS IN 168 SPECIES ARCHAE - 0 BACTERIA - 24 METAZOA - 448 FUNGI - 228 PLANTS - 85 VIRUSES - 0 OTHER EUKARYOTES - 556 (SOURCE NCBI BLINK) |
AT2G19560 | Experimentaltwo hybrid | FSW = 0.2000
| Unknown | EER5 (ENHANCED ETHYLENE RESPONSE 5) |
AT5G09510 | PredictedAffinity Capture-Westernco-fractionationCo-fractionationCo-purification | FSW = 0.1538
| Unknown | 40S RIBOSOMAL PROTEIN S15 (RPS15D) |
AT1G80030 | PredictedSynthetic Lethality | FSW = 0.0181
| Unknown | DNAJ HEAT SHOCK PROTEIN PUTATIVE |
AT1G19660 | PredictedSynthetic Lethality | FSW = 0.0200
| Unknown | WOUND-RESPONSIVE FAMILY PROTEIN |
AT1G12160 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5240
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G62540 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5240
| Unknown | FMO GS-OX2 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 2) 3-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 4-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 5-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 7-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 8-METHYL |
AT1G62570 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.5240
| Unknown | FMO GS-OX4 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 4) 4-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 8-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ FLAVIN-CONTAINING MONOOXYGENASE/ MONOOXYGENASE |
AT5G07800 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4455
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G12140 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.3263
| Unknown | FMO GS-OX5 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 5) 8-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ FLAVIN-CONTAINING MONOOXYGENASE/ MONOOXYGENASE |
AT1G12200 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4402
| Unknown | FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN |
AT1G65860 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.5240
| Unknown | FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1) 3-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 4-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 5-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 6-METHYLTHIOPROPYL GLUCOSINOLATE S-OXYGENASE/ 7-METHYL |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454