Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G61380 - ( TOC1 (TIMING OF CAB EXPRESSION 1) transcription regulator/ two-component response regulator )
25 Proteins interacs with AT5G61380Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G57360 | Experimentaltwo hybridaffinity technologytwo hybridaffinity technologyaffinity technologyAffinity Capture-WesternReconstituted ComplexAffinity Capture-WesternAffinity Capture-Westerntwo hybrid3 hybrid methodReconstituted Complexin vitroaffinity technologytwo hybrid | FSW = 0.1008
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | ZTL (ZEITLUPE) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G18915 | Experimentaltwo hybridtwo hybridReconstituted Complex | FSW = 0.1184
| Class A:nucleusClass B:cytosolClass D:nucleus (p = 0.78) | LKP2 (LOV KELCH PROTEIN 2) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G18650 | Experimental | FSW = 0.0381
| Class A:nucleusClass D:nucleus (p = 0.78) | AGL103 (AGAMOUS-LIKE 103) TRANSCRIPTION FACTOR |
AT1G22770 | ExperimentalPhenotypic Enhancement | FSW = 0.2475
| Class A:nucleusClass D:nucleus (p = 0.78) | GI (GIGANTEA) |
AT1G09530 | Experimentaltwo hybridtwo hybridtwo hybridtwo hybrid | FSW = 0.0821
| Class A:nucleusClass D:nucleus (p = 0.78) | PIF3 (PHYTOCHROME INTERACTING FACTOR 3) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REGULATOR |
AT2G20180 | Experimentaltwo hybrid | FSW = 0.0571
| Class A:nucleusClass D:nucleus (p = 0.78) | PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) DNA BINDING / PHYTOCHROME BINDING / TRANSCRIPTION FACTOR |
AT1G01060 | ExperimentalPhenotypic SuppressionPhenotypic EnhancementPhenotypic SuppressionPhenotypic EnhancementPhenotypic Suppression | FSW = 0.2165
| Class A:nucleusClass D:nucleus (p = 0.78) | LHY (LATE ELONGATED HYPOCOTYL) DNA BINDING / TRANSCRIPTION FACTOR |
AT2G46830 | ExperimentalPhenotypic SuppressionPhenotypic EnhancementPhenotypic SuppressionPhenotypic EnhancementPhenotypic Suppression | FSW = 0.1735
| Class A:nucleusClass D:nucleus (p = 0.78) | CCA1 (CIRCADIAN CLOCK ASSOCIATED 1) DNA BINDING / TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR |
AT5G24470 | ExperimentalAffinity Capture-WesternPhenotypic EnhancementPhenotypic SuppressionReconstituted Complex | FSW = 0.3963
| Class D:nucleus (p = 0.78) | APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT5G60100 | Experimentalaffinity technologyAffinity Capture-Western3 hybrid methodtwo hybridAffinity Capture-Western | FSW = 0.1143
| Class D:nucleus (p = 0.78) | APRR3 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 3) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT3G24650 | Experimentaltwo hybrid | FSW = 0.0381
| Class D:nucleus (p = 0.78) | ABI3 (ABA INSENSITIVE 3) DNA BINDING / BASAL TRANSCRIPTION REPRESSOR/ TRANSCRIPTION ACTIVATOR/ TRANSCRIPTION FACTOR |
AT2G43010 | Experimentaltwo hybridtwo hybrid | FSW = 0.1185
| Class D:nucleus (p = 0.78) | PIF4 (PHYTOCHROME INTERACTING FACTOR 4) DNA BINDING / PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT2G46790 | Experimentaltwo hybridReconstituted Complex | FSW = 0.1552
| Class D:nucleus (p = 0.78) | APRR9 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 9) PROTEIN BINDING / TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR |
AT1G68050 | Experimentaltwo hybridtwo hybridReconstituted ComplexAffinity Capture-Westerntwo hybrid | FSW = 0.1344
| Unknown | FKF1 (FLAVIN-BINDING KELCH REPEAT F BOX 1) SIGNAL TRANSDUCER/ TWO-COMPONENT SENSOR/ UBIQUITIN-PROTEIN LIGASE |
AT2G46970 | Experimentaltwo hybridtwo hybridpull downtwo hybridReconstituted Complexin vitro | FSW = 0.1143
| Unknown | PIL1 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 1) TRANSCRIPTION FACTOR |
AT1G28480 | Experimental | FSW = 0.0519
| Unknown | GRX480 ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT3G59060 | Experimentaltwo hybridtwo hybridtwo hybrid | FSW = 0.1641
| Unknown | PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) DNA BINDING / TRANSCRIPTION FACTOR |
AT3G62090 | Experimentaltwo hybrid | FSW = 0.0816
| Unknown | PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2) PROTEIN BINDING / TRANSCRIPTION FACTOR |
AT3G22380 | ExperimentalPhenotypic Enhancement | FSW = 0.1545
| Unknown | TIC (TIME FOR COFFEE) |
AT1G48350 | Predictedpull down | FSW = 0.0690
| Unknown | RIBOSOMAL PROTEIN L18 FAMILY PROTEIN |
AT1G69830 | Predictedpull down | FSW = 0.1143
| Unknown | AMY3 (ALPHA-AMYLASE-LIKE 3) ALPHA-AMYLASE |
AT5G15450 | Predictedpull down | FSW = 0.0038
| Unknown | CLPB3 (CASEIN LYTIC PROTEINASE B3) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
AT1G01290 | Predictedpull down | FSW = 0.0408
| Unknown | CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3) CATALYTIC |
AT4G36020 | Predictedpull down | FSW = 0.0253
| Unknown | CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT5G23535 | Predictedpull down | FSW = 0.0229
| Unknown | KOW DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454