Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G61460 - ( MIM (hypersensitive to MMS irradiation and MMC) ATP binding )

14 Proteins interacs with AT5G61460
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G59690Predicted

Affinity Capture-MS

FSW = 0.0075

Unknown

HISTONE H4
AT3G06720

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0073

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT5G22750

Predicted

synthetic growth defect

FSW = 0.0417

Unknown

RAD5 ATP BINDING / ATP-DEPENDENT HELICASE/ DNA BINDING / HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G60410

Predicted

biochemical

FSW = 0.0870

Unknown

SIZ1 DNA BINDING / SUMO LIGASE
AT3G23890

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.0636

Unknown

TOPII (TOPOISOMERASE II) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ DNA TOPOISOMERASE/ DNA-DEPENDENT ATPASE
AT1G10930

Predicted

synthetic growth defect

FSW = 0.0442

Unknown

RECQ4A ATP BINDING / ATP-DEPENDENT HELICASE/ HELICASE/ NUCLEIC ACID BINDING
AT1G16350

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0178

Unknown

INOSINE-5-MONOPHOSPHATE DEHYDROGENASE PUTATIVE
AT3G47460

Predicted

synthetic growth defect

FSW = 0.0336

Unknown

ATSMC2 TRANSPORTER
AT5G27740

Predicted

Synthetic Lethality

FSW = 0.0317

Unknown

EMB2775 (EMBRYO DEFECTIVE 2775) DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING
AT5G63920

Predicted

synthetic growth defect

FSW = 0.0581

Unknown

DNA TOPOISOMERASE III ALPHA PUTATIVE
AT1G51130

Predicted

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

Affinity Capture-Western

Reconstituted Complex

FSW = 0.2591

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN CONTAINS INTERPRO DOMAIN/S NSE4 (INTERPROIPR014854) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT3G207601) HAS 200 BLAST HITS TO 198 PROTEINS IN 89 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 63 FUNGI - 88 PLANTS - 37 VIRUSES - 0 OTHER EUKARYOTES - 12 (SOURCE NCBI BLINK)
AT5G15920

Predicted

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

Co-purification

FSW = 0.2591

Unknown

STRUCTURAL MAINTENANCE OF CHROMOSOMES (SMC) FAMILY PROTEIN (MSS2)
AT5G21140

Predicted

Affinity Capture-MS

FSW = 0.2807

Unknown

EMB1379 (EMBRYO DEFECTIVE 1379)
AT2G01830

Predicted

Gene fusion method

FSW = 0.0116

Unknown

WOL (WOODEN LEG) CYTOKININ RECEPTOR/ OSMOSENSOR/ PHOSPHOPROTEIN PHOSPHATASE/ PROTEIN HISTIDINE KINASE

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454