Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G61520 - ( hexose transporter putative )

13 Proteins interacs with AT5G61520
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G04820Predicted

Phenotypic Enhancement

FSW = 0.0282

Class C:

plastid

plasma membrane

TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT3G08710

Predicted

two hybrid

FSW = 0.0278

Class C:

plasma membrane

ATH9 (THIOREDOXIN H-TYPE 9)
AT3G19930

Predicted

Gene fusion method

Co-expression

FSW = 0.1012

Class C:

plasma membrane

STP4 (SUGAR TRANSPORTER 4) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUCROSEHYDROGEN SYMPORTER/ SUGARHYDROGEN SYMPORTER
AT4G24400

Predicted

Affinity Capture-MS

Phenotypic Enhancement

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0697

Class C:

plasma membrane

CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) KINASE/ PROTEIN KINASE
AT5G23270

Predicted

Gene fusion method

Co-expression

FSW = 0.2000

Class C:

plasma membrane

STP11 (SUGAR TRANSPORTER 11) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT3G46900

Predicted

Affinity Capture-MS

FSW = 0.0133

Class C:

plasma membrane

COPT2 COPPER ION TRANSMEMBRANE TRANSPORTER/ HIGH AFFINITY COPPER ION TRANSMEMBRANE TRANSPORTER
AT3G62870

Predicted

two hybrid

FSW = 0.0188

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT1G10060

Predicted

two hybrid

FSW = 0.0147

Unknown

BRANCHED-CHAIN AMINO ACID AMINOTRANSFERASE 1 / BRANCHED-CHAIN AMINO ACID TRANSAMINASE 1 (BCAT1)
AT2G39590

Predicted

Affinity Capture-MS

FSW = 0.0847

Unknown

40S RIBOSOMAL PROTEIN S15A (RPS15AC)
AT4G25540

Predicted

two hybrid

FSW = 0.0357

Unknown

MSH3 (ARABIDOPSIS HOMOLOG OF DNA MISMATCH REPAIR PROTEIN MSH3) DAMAGED DNA BINDING / MISMATCHED DNA BINDING / PROTEIN BINDING
AT1G34580

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0144

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT3G19940

Predicted

Gene fusion method

Co-expression

FSW = 0.0895

Unknown

SUGAR TRANSPORTER PUTATIVE
AT4G21480

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0889

Unknown

CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER

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Fasta sequences:

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454