Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G61780 - ( tudor domain-containing protein / nuclease family protein )

8 Proteins interacs with AT5G61780
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G35800

Predicted

in vitro

in vivo

FSW = 0.0499

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT4G21010

Predicted

in vivo

in vitro

FSW = 0.0945

Unknown

TRANSCRIPTION INITIATION FACTOR-RELATED
AT4G20340

Predicted

in vivo

in vitro

FSW = 0.1625

Unknown

RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION INITIATION FACTOR
AT1G77180

Predicted

Affinity Capture-Western

FSW = 0.0345

Unknown

CHROMATIN PROTEIN FAMILY
AT4G20810

Predicted

in vivo

in vitro

FSW = 0.1696

Unknown

TRANSCRIPTION INITIATION FACTOR IIE (TFIIE) ALPHA SUBUNIT FAMILY PROTEIN / GENERAL TRANSCRIPTION FACTOR TFIIE FAMILY PROTEIN
AT5G11510

Predicted

in vitro

two hybrid

in vitro

in vitro

two hybrid

Affinity Capture-MS

FSW = 0.0504

Unknown

MYB3R-4 (MYB DOMAIN PROTEIN 3R-4) DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION FACTOR
AT1G03150

Predicted

two hybrid

FSW = 0.0462

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE (GNAT) FAMILY PROTEIN
AT4G20330

Predicted

in vivo

in vitro

FSW = 0.0969

Unknown

TRANSCRIPTION INITIATION FACTOR-RELATED

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454