Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G61790 - ( calnexin 1 (CNX1) )
34 Proteins interacs with AT5G61790| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT1G77510
   | Predictedin vitro | FSW = 0.1414
| Class C:vacuoleplastidplasma membraneendoplasmic reticulum | ATPDIL1-2 (PDI-LIKE 1-2) PROTEIN DISULFIDE ISOMERASE |
| AT5G66680
| PredictedPhenotypic Enhancement | FSW = 0.0974
| Class C:vacuoleplasma membraneextracellularendoplasmic reticulum | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
| AT1G09870
| PredictedAffinity Capture-Western | FSW = 0.1081
| Class C:vacuoleextracellular | HISTIDINE ACID PHOSPHATASE FAMILY PROTEIN |
| AT5G42570
| Predictedin vivo | FSW = 0.0432
| Class C:vacuoleendoplasmic reticulum | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN INTRACELLULAR PROTEIN TRANSPORT LOCATED IN ENDOPLASMIC RETICULUM PLASMA MEMBRANE EXPRESSED IN 26 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S B-CELL RECEPTOR-ASSOCIATED 31-LIKE (INTERPROIPR008417) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT1G119051) HAS 311 BLAST HITS TO 268 PROTEINS IN 81 SPECIES ARCHAE - 2 BACTERIA - 2 METAZOA - 134 FUNGI - 41 PLANTS - 73 VIRUSES - 0 OTHER EUKARYOTES - 59 (SOURCE NCBI BLINK) |
| AT4G01320
| PredictedPhenotypic Enhancement | FSW = 0.0598
| Class C:vacuoleendoplasmic reticulum | ATSTE24 ENDOPEPTIDASE/ METALLOENDOPEPTIDASE |
| AT1G30400
| Predictedin vivo | FSW = 0.0474
| Class C:vacuole | MRP1 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1) ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES / XENOBIOTIC-TRANSPORTING ATPASE |
| AT5G63840
| PredictedPhenotypic Enhancement | FSW = 0.1985
| Class C:plastidendoplasmic reticulum | RSW3 (RADIAL SWELLING 3) GLUCOSIDASE/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
| AT1G26560
| Predictedin vivo | FSW = 0.0193
| Class C:plastid | BGLU40 (BETA GLUCOSIDASE 40) CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
| AT5G16150
| Predictedin vivo | FSW = 0.0202
| Class C:plastid | PGLCT (PLASTIDIC GLC TRANSLOCATOR) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER |
| AT5G23630
| PredictedPhenotypic Enhancement | FSW = 0.1257
| Class C:plasma membraneendoplasmic reticulum | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
| AT5G22060
| PredictedSynthetic Lethality | FSW = 0.0256
| Class C:plasma membrane | ATJ2 PROTEIN BINDING |
| AT5G52640
| Predictedsynthetic growth defect | FSW = 0.0123
| Class C:plasma membrane | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT2G39630
| PredictedPhenotypic Enhancement | FSW = 0.1852
| Class C:endoplasmic reticulum | GLYCOSYL TRANSFERASE FAMILY 2 PROTEIN |
| AT1G67490
| PredictedPhenotypic Enhancement | FSW = 0.2505
| Class C:endoplasmic reticulum | GCS1 (GLUCOSIDASE 1) ALPHA-GLUCOSIDASE |
| AT5G08470
| PredictedSynthetic Lethality | FSW = 0.0333
| Unknown | PEX1 (PEROXISOME 1) ATP BINDING / ATPASE/ BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING |
| AT4G30860
| Predictedtwo hybrid | FSW = 0.0160
| Unknown | SDG4 (SET DOMAIN GROUP 4) HISTONE METHYLTRANSFERASE |
| AT2G13650
| PredictedPhenotypic Enhancement | FSW = 0.0145
| Unknown | GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-MANNOSE TRANSMEMBRANE TRANSPORTER/ NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
| AT1G71270
| PredictedPhenotypic Enhancement | FSW = 0.1067
| Unknown | POK (POKY POLLEN TUBE) |
| AT1G05200
| Predictedin vivo | FSW = 0.0618
| Unknown | ATGLR34 INTRACELLULAR LIGAND-GATED ION CHANNEL |
| AT5G11210
| Predictedin vivo | FSW = 0.0333
| Unknown | ATGLR25 INTRACELLULAR LIGAND-GATED ION CHANNEL |
| AT4G39220
| PredictedPhenotypic Enhancement | FSW = 0.2045
| Unknown | ATRER1A |
| AT5G53360
| Predictedtwo hybrid | FSW = 0.0086
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
| AT1G27520
| PredictedAffinity Capture-Westernin vivo | FSW = 0.0865
| Unknown | GLYCOSIDE HYDROLASE FAMILY 47 PROTEIN |
| AT3G60160
| Predictedin vivo | FSW = 0.0526
| Unknown | ATMRP9 ATPASE COUPLED TO TRANSMEMBRANE MOVEMENT OF SUBSTANCES |
| AT5G19660
| Predictedin vivoAffinity Capture-MS | FSW = 0.0121
| Unknown | S1P (SITE-1 PROTEASE) ENDOPEPTIDASE/ SERINE-TYPE ENDOPEPTIDASE |
| AT5G56360
| Predictedin vivoin vitroAffinity Capture-MSCo-expression | FSW = 0.0912
| Unknown | CALMODULIN-BINDING PROTEIN |
| AT5G03760
| Predictedin vivoin vitro | FSW = 0.0393
| Unknown | ATCSLA09 MANNAN SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
| AT5G24550
| Predictedin vivo | FSW = 0.0193
| Unknown | BGLU32 (BETA GLUCOSIDASE 32) CATALYTIC/ CATION BINDING / HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
| AT1G16560
| PredictedPhenotypic Enhancement | FSW = 0.2188
| Unknown | PER1-LIKE FAMILY PROTEIN |
| AT1G26450
| PredictedPhenotypic Enhancement | FSW = 0.1739
| Unknown | BETA-13-GLUCANASE-RELATED |
| AT1G57600
| PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1656
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
| AT2G22530
| PredictedPhenotypic Enhancement | FSW = 0.2009
| Unknown | CATALYTIC/ TRANSFERASE |
| ATCG01230 | PredictedSynthetic Lethality | FSW = 0.0288
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
| AT2G41980
| Predictedtwo hybrid | FSW = 0.0188
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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