Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G61970 - ( signal recognition particle-related / SRP-related )
17 Proteins interacs with AT5G61970Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G16520 | Predictedtwo hybrid | FSW = 0.0571
| Unknown | ATG8F (AUTOPHAGY 8F) MICROTUBULE BINDING |
AT2G05630 | Predictedtwo hybridtwo hybrid | FSW = 0.0571
| Unknown | AUTOPHAGY 8D (APG8D) |
AT5G60390 | Predictedtwo hybrid | FSW = 0.0105
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT1G07940 | Predictedtwo hybridtwo hybrid | FSW = 0.0323
| Unknown | ELONGATION FACTOR 1-ALPHA / EF-1-ALPHA |
AT3G55930 | Predictedtwo hybrid | FSW = 0.0745
| Unknown | RNA SPLICING FACTOR-RELATED |
AT1G28060 | Predictedtwo hybridtwo hybrid | FSW = 0.0469
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN / SNRNP FAMILY PROTEIN |
AT1G10320 | Predictedtwo hybridtwo hybrid | FSW = 0.1610
| Unknown | U2 SNRNP AUXILIARY FACTOR-RELATED |
AT2G26940 | Predictedtwo hybrid | FSW = 0.1455
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0100
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT4G29720 | Predictedtwo hybrid | FSW = 0.0889
| Unknown | ATPAO5 (POLYAMINE OXIDASE 5) AMINE OXIDASE/ ELECTRON CARRIER/ OXIDOREDUCTASE |
AT5G09740 | Predictedtwo hybridtwo hybrid | FSW = 0.0085
| Unknown | HAM2 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 2) H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE/ NUCLEIC ACID BINDING / ZINC ION BINDING |
AT5G10220 | Predictedtwo hybrid | FSW = 0.1672
| Unknown | ANN6 (ANNEXIN ARABIDOPSIS 6) CALCIUM ION BINDING / CALCIUM-DEPENDENT PHOSPHOLIPID BINDING |
AT1G03910 | Predictedtwo hybridtwo hybrid | FSW = 0.0909
| Unknown | EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CACTIN CENTRAL REGION (INTERPROIPR018816) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT2G368152) HAS 11516 BLAST HITS TO 6722 PROTEINS IN 356 SPECIES ARCHAE - 23 BACTERIA - 259 METAZOA - 6122 FUNGI - 1009 PLANTS - 493 VIRUSES - 33 OTHER EUKARYOTES - 3577 (SOURCE NCBI BLINK) |
AT5G17410 | Predictedtwo hybridtwo hybrid | FSW = 0.0667
| Unknown | TUBULIN FAMILY PROTEIN |
AT1G67680 | Predictedin vitro | FSW = 0.0889
| Unknown | 7S RNA BINDING |
AT1G68090 | Predictedtwo hybrid | FSW = 0.1558
| Unknown | ANN5 CALCIUM ION BINDING / CALCIUM-DEPENDENT PHOSPHOLIPID BINDING |
AT5G43300 | Predictedtwo hybrid | FSW = 0.1600
| Unknown | GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE/ PHOSPHORIC DIESTER HYDROLASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454