Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G62030 - ( diphthamide synthesis DPH2 family protein )

18 Proteins interacs with AT5G62030
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G67500

Predicted

Affinity Capture-MS

FSW = 0.0147

Unknown

VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2) VOLTAGE-GATED ANION CHANNEL
AT1G56070

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0392

Unknown

LOS1 COPPER ION BINDING / TRANSLATION ELONGATION FACTOR/ TRANSLATION FACTOR NUCLEIC ACID BINDING
AT5G42020

Predicted

two hybrid

FSW = 0.0293

Unknown

BIP2 ATP BINDING
AT5G09650

Predicted

Affinity Capture-MS

FSW = 0.0201

Unknown

ATPPA6 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 6) INORGANIC DIPHOSPHATASE/ PYROPHOSPHATASE
AT5G23010

Predicted

Affinity Capture-MS

FSW = 0.1325

Unknown

MAM1 (METHYLTHIOALKYLMALATE SYNTHASE 1) 2-ISOPROPYLMALATE SYNTHASE/ METHYLTHIOALKYLMALATE SYNTHASE
AT1G18500

Predicted

Affinity Capture-MS

FSW = 0.1265

Unknown

MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4) 2-ISOPROPYLMALATE SYNTHASE
AT5G56030

Predicted

Affinity Capture-MS

FSW = 0.0331

Unknown

HSP81-2 (HEAT SHOCK PROTEIN 81-2) ATP BINDING
AT5G52640

Predicted

Affinity Capture-MS

FSW = 0.0080

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT4G16830

Predicted

Affinity Capture-MS

FSW = 0.0213

Unknown

NUCLEAR RNA-BINDING PROTEIN (RGGA)
AT5G67270

Predicted

synthetic growth defect

FSW = 0.0142

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G13920

Predicted

Affinity Capture-MS

FSW = 0.0327

Unknown

EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR
AT1G51510

Predicted

Affinity Capture-MS

two hybrid

FSW = 0.0762

Unknown

Y14 RNA BINDING / PROTEIN BINDING
AT3G15220

Predicted

biochemical

FSW = 0.0305

Unknown

PROTEIN KINASE PUTATIVE
AT3G47690

Predicted

synthetic growth defect

FSW = 0.0188

Unknown

ATEB1A MICROTUBULE BINDING
AT3G23580

Predicted

Affinity Capture-MS

FSW = 0.0564

Unknown

RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE
AT3G59630

Predicted

two hybrid

two hybrid

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

two hybrid

FSW = 0.2451

Unknown

DIPHTHAMIDE SYNTHESIS DPH2 FAMILY PROTEIN
AT3G27060

Predicted

Affinity Capture-MS

FSW = 0.0528

Unknown

TSO2 (TSO MEANING UGLY IN CHINESE) OXIDOREDUCTASE/ RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE/ TRANSITION METAL ION BINDING
AT2G15910

Predicted

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0398

Unknown

CSL ZINC FINGER DOMAIN-CONTAINING PROTEIN

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454