Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G62540 - ( UBC3 (ubiquitin-conjugating enzyme 3) ubiquitin-protein ligase )
24 Proteins interacs with AT5G62540Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G04120 | Predictedtwo hybrid | FSW = 0.0135
| Unknown | GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1) GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE (PHOSPHORYLATING)/ GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE |
AT1G36340 | PredictedPhylogenetic profile method | FSW = 0.5983
| Unknown | UBC31 (UBIQUITIN-CONJUGATING ENZYME 31) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT1G08450 | Predictedtwo hybrid | FSW = 0.0395
| Unknown | CRT3 (CALRETICULIN 3) CALCIUM ION BINDING / UNFOLDED PROTEIN BINDING |
AT1G64230 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.3518
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT2G44950 | Predictedtwo hybrid | FSW = 0.0360
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G78870 | Predictedtwo hybrid | FSW = 0.3462
| Unknown | UBC35 (UBIQUITIN-CONJUGATING ENZYME 35) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0076
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT5G02310 | PredictedAffinity Capture-Western | FSW = 0.0476
| Unknown | PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE |
AT5G25760 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.6552
| Unknown | PEX4 (PEROXIN4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT2G32790 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4196
| Unknown | UBIQUITIN-CONJUGATING ENZYME PUTATIVE |
AT3G08690 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.5203
| Unknown | UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) UBIQUITIN-PROTEIN LIGASE |
AT2G16740 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.1336
| Unknown | UBC29 (UBIQUITIN-CONJUGATING ENZYME 29) UBIQUITIN-PROTEIN LIGASE |
AT2G02760 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.2230
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT5G56150 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.4512
| Unknown | UBC30 (UBIQUITIN-CONJUGATING ENZYME 30) UBIQUITIN-PROTEIN LIGASE |
AT3G57870 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.0775
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT5G59300 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.2106
| Unknown | UBC7 (UBIQUITIN CARRIER PROTEIN 7) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT3G46460 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.4500
| Unknown | UBC13 (UBIQUITIN-CONJUGATING ENZYME 13) UBIQUITIN-PROTEIN LIGASE |
AT1G45050 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.3373
| Unknown | ATUBC2-1 UBIQUITIN-PROTEIN LIGASE |
AT3G55380 | PredictedShared biological functionPhylogenetic profile methodCo-expression | FSW = 0.3673
| Unknown | UBC14 (UBIQUITIN-CONJUGATING ENZYME 14) UBIQUITIN-PROTEIN LIGASE |
AT1G14400 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2236
| Unknown | UBC1 (UBIQUITIN CARRIER PROTEIN 1) UBIQUITIN-PROTEIN LIGASE |
AT5G53300 | PredictedPhylogenetic profile method | FSW = 0.4460
| Unknown | UBC10 (UBIQUITIN-CONJUGATING ENZYME 10) UBIQUITIN-PROTEIN LIGASE |
AT3G08700 | PredictedPhylogenetic profile method | FSW = 0.5314
| Unknown | UBC12 (UBIQUITIN-CONJUGATING ENZYME 12) SMALL CONJUGATING PROTEIN LIGASE/ UBIQUITIN-PROTEIN LIGASE |
AT5G41700 | PredictedPhylogenetic profile method | FSW = 0.1643
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G27960 | PredictedPhylogenetic profile method | FSW = 0.3568
| Unknown | UBC9 (UBIQUITIN CONJUGATING ENZYME 9) UBIQUITIN-PROTEIN LIGASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454