Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G62600 - ( transportin-SR-related )

26 Proteins interacs with AT5G62600
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G14960

Predicted

Affinity Capture-MS

FSW = 0.0313

Unknown

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G04820Predicted

Affinity Capture-MS

FSW = 0.0272

Unknown

TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT2G07698

Predicted

two hybrid

two hybrid

FSW = 0.0212

Unknown

ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE
AT3G12580

Predicted

interaction prediction

FSW = 0.0150

Unknown

HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING
AT2G21660

Predicted

interaction prediction

FSW = 0.0923

Unknown

CCR2 (COLD CIRCADIAN RHYTHM AND RNA BINDING 2) RNA BINDING / DOUBLE-STRANDED DNA BINDING / SINGLE-STRANDED DNA BINDING
AT3G04050

Predicted

Affinity Capture-MS

FSW = 0.0255

Unknown

PYRUVATE KINASE PUTATIVE
AT5G63680

Predicted

Affinity Capture-MS

FSW = 0.0200

Unknown

PYRUVATE KINASE PUTATIVE
AT5G14170

Predicted

two hybrid

FSW = 0.0086

Unknown

CHC1
AT1G24310

Predicted

two hybrid

interaction prediction

FSW = 0.0267

Unknown

UNKNOWN PROTEIN
AT1G02840

Predicted

far western blotting

FSW = 0.0308

Unknown

SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G80370

Predicted

two hybrid

FSW = 0.0251

Unknown

CYCA24 (CYCLIN A24) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G54290

Predicted

two hybrid

two hybrid

FSW = 0.0136

Unknown

EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE
AT3G57870

Predicted

in vivo

in vitro

FSW = 0.0160

Unknown

SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE
AT5G59410

Predicted

Affinity Capture-MS

FSW = 0.0276

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RAB5-INTERACTING (INTERPROIPR010742) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RAB5-INTERACTING FAMILY PROTEIN (TAIRAT2G290201) HAS 154 BLAST HITS TO 154 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 108 FUNGI - 0 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK)
AT1G59890

Predicted

Affinity Capture-MS

FSW = 0.0066

Unknown

SNL5 (SIN3-LIKE 5)
AT5G22840

Predicted

Synthetic Lethality

FSW = 0.0313

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G61500

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0502

Unknown

ATG3
AT2G16950

Predicted

Affinity Capture-MS

FSW = 0.0882

Unknown

TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER
AT4G25120Predicted

two hybrid

FSW = 0.0158

Unknown

ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE
AT1G10450

Predicted

Affinity Capture-MS

FSW = 0.0141

Unknown

SNL6 (SIN3-LIKE 6)
AT5G40490

Predicted

Synthetic Lethality

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

interologs mapping

Synthetic Lethality

FSW = 0.0548

Unknown

RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT2G17530

Predicted

Synthetic Lethality

FSW = 0.1032

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT1G53570

Predicted

Synthetic Rescue

FSW = 0.0500

Unknown

MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G55190

Predicted

two hybrid

Enriched domain pair

Co-expression

FSW = 0.0521

Unknown

RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING
AT1G47230

Predicted

two hybrid

FSW = 0.0162

Unknown

CYCLIN PUTATIVE
AT1G24190

Predicted

interaction prediction

FSW = 0.0221

Unknown

SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454