Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G62600 - ( transportin-SR-related )
26 Proteins interacs with AT5G62600Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G14960 | PredictedAffinity Capture-MS | FSW = 0.0313
| Unknown | TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT1G04820 | PredictedAffinity Capture-MS | FSW = 0.0272
| Unknown | TUA4 STRUCTURAL CONSTITUENT OF CYTOSKELETON |
AT2G07698 | Predictedtwo hybridtwo hybrid | FSW = 0.0212
| Unknown | ATP SYNTHASE ALPHA CHAIN MITOCHONDRIAL PUTATIVE |
AT3G12580 | Predictedinteraction prediction | FSW = 0.0150
| Unknown | HSP70 (HEAT SHOCK PROTEIN 70) ATP BINDING |
AT2G21660 | Predictedinteraction prediction | FSW = 0.0923
| Unknown | CCR2 (COLD CIRCADIAN RHYTHM AND RNA BINDING 2) RNA BINDING / DOUBLE-STRANDED DNA BINDING / SINGLE-STRANDED DNA BINDING |
AT3G04050 | PredictedAffinity Capture-MS | FSW = 0.0255
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G63680 | PredictedAffinity Capture-MS | FSW = 0.0200
| Unknown | PYRUVATE KINASE PUTATIVE |
AT5G14170 | Predictedtwo hybrid | FSW = 0.0086
| Unknown | CHC1 |
AT1G24310 | Predictedtwo hybridinteraction prediction | FSW = 0.0267
| Unknown | UNKNOWN PROTEIN |
AT1G02840 | Predictedfar western blotting | FSW = 0.0308
| Unknown | SR1 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G80370 | Predictedtwo hybrid | FSW = 0.0251
| Unknown | CYCA24 (CYCLIN A24) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT1G54290 | Predictedtwo hybridtwo hybrid | FSW = 0.0136
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 PUTATIVE |
AT3G57870 | Predictedin vivoin vitro | FSW = 0.0160
| Unknown | SCE1 (SUMO CONJUGATION ENZYME 1) SUMO LIGASE |
AT5G59410 | PredictedAffinity Capture-MS | FSW = 0.0276
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 22 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S RAB5-INTERACTING (INTERPROIPR010742) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS RAB5-INTERACTING FAMILY PROTEIN (TAIRAT2G290201) HAS 154 BLAST HITS TO 154 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 108 FUNGI - 0 PLANTS - 26 VIRUSES - 0 OTHER EUKARYOTES - 20 (SOURCE NCBI BLINK) |
AT1G59890 | PredictedAffinity Capture-MS | FSW = 0.0066
| Unknown | SNL5 (SIN3-LIKE 5) |
AT5G22840 | PredictedSynthetic Lethality | FSW = 0.0313
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G61500 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0502
| Unknown | ATG3 |
AT2G16950 | PredictedAffinity Capture-MS | FSW = 0.0882
| Unknown | TRN1 (TRANSPORTIN 1) PROTEIN TRANSPORTER |
AT4G25120 | Predictedtwo hybrid | FSW = 0.0158
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT1G10450 | PredictedAffinity Capture-MS | FSW = 0.0141
| Unknown | SNL6 (SIN3-LIKE 6) |
AT5G40490 | PredictedSynthetic LethalityReconstituted ComplexAffinity Capture-WesternAffinity Capture-WesternAffinity Capture-Westerninterologs mappingSynthetic Lethality | FSW = 0.0548
| Unknown | RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN |
AT2G17530 | PredictedSynthetic Lethality | FSW = 0.1032
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT1G53570 | PredictedSynthetic Rescue | FSW = 0.0500
| Unknown | MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G55190 | Predictedtwo hybridEnriched domain pairCo-expression | FSW = 0.0521
| Unknown | RAN3 (RAN GTPASE 3) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT1G47230 | Predictedtwo hybrid | FSW = 0.0162
| Unknown | CYCLIN PUTATIVE |
AT1G24190 | Predictedinteraction prediction | FSW = 0.0221
| Unknown | SNL3 (SIN3-LIKE 3) TRANSCRIPTION REPRESSOR |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454