Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G62810 - ( PEX14 protein binding / protein transporter )
11 Proteins interacs with AT5G62810| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT3G07560
   | Experimentalinteraction detection method | FSW = 0.2297
| Class A:peroxisomeClass B:plasma membranecytosol | PEX13 (PEROXIN 13) PROTEIN BINDING |
| AT5G56290
| Experimentaltwo hybrid | FSW = 0.1232
| Class A:peroxisomeClass B:plasma membraneClass D:cytosol (p = 0.67) | PEX5 (PEROXIN 5) PEROXISOME MATRIX TARGETING SIGNAL-1 BINDING / PROTEIN BINDING |
| AT1G29260
| PredictedAffinity Capture-MSin vivotwo hybrid | FSW = 0.1254
| Class C:peroxisome | PEX7 PEROXISOME MATRIX TARGETING SIGNAL-2 BINDING / PROTEIN BINDING |
| AT5G17550
| Predictedtwo hybridin vivoin vitroAffinity Capture-MS | FSW = 0.1214
| Class C:peroxisome | PEX19-2 |
| AT1G09770
| Predictedtwo hybrid | FSW = 0.0144
| Unknown | ATCDC5 (ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5) DNA BINDING / TRANSCRIPTION FACTOR |
| AT4G38130
| Predictedin vivoAffinity Capture-MS | FSW = 0.0118
| Unknown | HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING |
| AT4G34390
| Predictedtwo hybrid | FSW = 0.0345
| Unknown | XLG2 (EXTRA-LARGE GTP-BINDING PROTEIN 2) GUANYL NUCLEOTIDE BINDING / SIGNAL TRANSDUCER |
| AT2G21790
| Predictedtwo hybrid | FSW = 0.0334
| Unknown | RNR1 (RIBONUCLEOTIDE REDUCTASE 1) ATP BINDING / PROTEIN BINDING / RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE |
| AT3G52590 | Predictedtwo hybrid | FSW = 0.0454
| Unknown | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) PROTEIN BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT3G12430
| Predictedtwo hybrid | FSW = 0.1641
| Unknown | 3-5 EXONUCLEASE/ NUCLEIC ACID BINDING |
| AT3G57350
| Predictedtwo hybrid | FSW = 0.0618
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN TRANSPORT LOCATED IN NUCLEAR PORE CONTAINS INTERPRO DOMAIN/S NUCLEOPORIN INTERACTING COMPONENT NUP93/NIC96 (INTERPROIPR007231) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS NUCLEOPORIN INTERACTING COMPONENT FAMILY PROTEIN (TAIRAT2G416201) HAS 234 BLAST HITS TO 230 PROTEINS IN 99 SPECIES ARCHAE - 0 BACTERIA - 3 METAZOA - 124 FUNGI - 76 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 2 (SOURCE NCBI BLINK) |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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