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AT5G62880 - ( ARAC10 GTP binding )

87 Proteins interacs with AT5G62880

Locus	Method	FSW	Cellular Compartment Classification (C3)	Description
AT2G44690	Experimental	FSW = 0.1455	Class A: plasma membrane Class B: nucleus Class D: plastid (p = 0.78) mitochondrion (p = 0.82) cytosol (p = 0.67)	ARAC9 GTP BINDING
AT2G38440	Experimental	FSW = 0.0566	Class A: plasma membrane Class B: nucleus	SCAR2 (SCAR HOMOLOG 2)
AT5G01730	Experimental	FSW = 0.0565	Class B: plastid plasma membrane nucleus	ATSCAR4
AT2G34150	Experimental	FSW = 0.0406	Unknown	WAVE1 ACTIN MONOMER BINDING
AT5G15090	Predicted Affinity Capture-MS	FSW = 0.0589	Class C: plasma membrane nucleus	VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3) VOLTAGE-GATED ANION CHANNEL
AT1G71860	Predicted Synthetic Rescue	FSW = 0.0204	Class C: plasma membrane nucleus	PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) PROTEIN TYROSINE PHOSPHATASE
AT1G75840	Predicted Phylogenetic profile method Co-expression	FSW = 0.0860	Class C: plasma membrane nucleus	ARAC5 (RAC-LIKE GTP BINDING PROTEIN 5) GTP BINDING / GTPASE
AT3G15710	Predicted Synthetic Rescue	FSW = 0.0116	Class C: plasma membrane	SIGNAL PEPTIDASE PUTATIVE
AT3G08710	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0703	Class C: plasma membrane	ATH9 (THIOREDOXIN H-TYPE 9)
AT1G20620	Predicted Synthetic Rescue two hybrid Affinity Capture-Western two hybrid Affinity Capture-Western Reconstituted Complex two hybrid Affinity Capture-Western two hybrid two hybrid two hybrid Affinity Capture-MS Affinity Capture-MS two hybrid Reconstituted Complex Affinity Capture-Western Co-purification Synthetic Rescue Dosage Growth Defect	FSW = 0.0547	Class C: plasma membrane	CAT3 (CATALASE 3) CATALASE
AT5G57490	Predicted Affinity Capture-MS	FSW = 0.0264	Class C: plasma membrane	VDAC4 (VOLTAGE DEPENDENT ANION CHANNEL 4) VOLTAGE-GATED ANION CHANNEL
AT4G28950	Predicted Phylogenetic profile method Co-expression	FSW = 0.1569	Class C: plasma membrane	ROP9 (RHO-RELATED PROTEIN FROM PLANTS 9) GTP BINDING
AT3G13560	Predicted Affinity Capture-MS co-fractionation Co-fractionation Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification Reconstituted Complex co-fractionation Co-fractionation	FSW = 0.1764	Class C: plasma membrane	GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT2G18180	Predicted Affinity Capture-Western Affinity Capture-Western	FSW = 0.0580	Class C: plasma membrane	SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHOGLYCERIDE TRANSFER PROTEIN PUTATIVE
AT4G36640	Predicted Synthetic Rescue	FSW = 0.0027	Class C: plasma membrane	SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT1G20090	Predicted Phylogenetic profile method Co-expression	FSW = 0.0869	Class C: plasma membrane	ROP2 (RHO-RELATED PROTEIN FROM PLANTS 2) GTP BINDING
AT5G45970	Predicted Gene neighbors method Phylogenetic profile method Co-expression	FSW = 0.0961	Class C: plasma membrane	ARAC2 (ARABIDOPSIS RAC-LIKE 2) GTP BINDING
AT4G35020	Predicted Phylogenetic profile method Co-expression	FSW = 0.0864	Class C: plasma membrane	ARAC3 (ARABIDOPSIS RAC-LIKE 3) GTP BINDING / GTPASE
AT1G13320	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS	FSW = 0.0910	Class C: plasma membrane	PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3) BINDING / PROTEIN PHOSPHATASE TYPE 2A REGULATOR
AT4G35950	Predicted Phylogenetic profile method Co-expression	FSW = 0.1875	Class C: plasma membrane	ARAC6 (ARABIDOPSIS RAC-LIKE 6) GTP BINDING
AT3G48040	Predicted Phylogenetic profile method Co-expression	FSW = 0.1630	Class C: plasma membrane	ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10) GTP BINDING / GTPASE
AT4G02050	Predicted Synthetic Rescue Affinity Capture-Western	FSW = 0.0283	Class C: plasma membrane	SUGAR TRANSPORTER PUTATIVE
AT1G79930	Predicted Synthetic Rescue Phenotypic Suppression	FSW = 0.0362	Class C: plasma membrane	HSP91 ATP BINDING
AT5G58430	Predicted Reconstituted Complex	FSW = 0.0148	Class C: plasma membrane	ATEXO70B1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN B1) PROTEIN BINDING
AT3G47960	Predicted Affinity Capture-MS	FSW = 0.0529	Class C: plasma membrane	PROTON-DEPENDENT OLIGOPEPTIDE TRANSPORT (POT) FAMILY PROTEIN
AT3G62030	Predicted Affinity Capture-Western interologs mapping	FSW = 0.0224	Class C: nucleus	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CHLOROPLAST / CYCLOPHILIN / ROTAMASE / CYCLOSPORIN A-BINDING PROTEIN (ROC4)
AT1G07790	Predicted Affinity Capture-MS	FSW = 0.0171	Class C: nucleus	HTB1 DNA BINDING
AT4G09570	Predicted Affinity Capture-MS	FSW = 0.0025	Class C: nucleus	CPK4 CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE
AT4G14340	Predicted Affinity Capture-MS	FSW = 0.0269	Class C: nucleus	CKI1 (CASEIN KINASE I) KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G02680	Predicted Affinity Capture-MS co-fractionation Co-fractionation two hybrid two hybrid Reconstituted Complex Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS two hybrid Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western two hybrid Co-purification interologs mapping co-fractionation Co-fractionation	FSW = 0.0792	Class C: nucleus	TAF13 (TBP-ASSOCIATED FACTOR 13) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR
AT2G36170	Predicted Affinity Capture-MS	FSW = 0.0152	Class C: nucleus	UBIQUITIN EXTENSION PROTEIN 2 (UBQ2) / 60S RIBOSOMAL PROTEIN L40 (RPL40A)
AT4G31720	Predicted Affinity Capture-MS	FSW = 0.0156	Class C: nucleus	TAFII15 (TBP-ASSOCIATED FACTOR II 15) RNA POLYMERASE II TRANSCRIPTION FACTOR/ TRANSCRIPTION FACTOR
AT5G63400	Predicted Affinity Capture-Western Affinity Capture-Western Reconstituted Complex Phenotypic Enhancement Synthetic Rescue interologs mapping	FSW = 0.0261	Unknown	ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR
AT4G17730	Predicted Affinity Capture-MS	FSW = 0.0489	Unknown	SYP23 (SYNTAXIN OF PLANTS 23) SNAP RECEPTOR
AT4G01840	Predicted Affinity Capture-MS	FSW = 0.0217	Unknown	KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) OUTWARD RECTIFIER POTASSIUM CHANNEL
AT5G01820	Predicted Affinity Capture-MS Affinity Capture-MS two hybrid two hybrid	FSW = 0.0625	Unknown	ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G19160	Predicted Affinity Capture-MS	FSW = 0.0244	Unknown	ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) ADENYLATE DIMETHYLALLYLTRANSFERASE
AT3G11630	Predicted Affinity Capture-MS	FSW = 0.0400	Unknown	2-CYS PEROXIREDOXIN CHLOROPLAST (BAS1)
AT3G06040	Predicted Affinity Capture-MS	FSW = 0.0499	Unknown	RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT5G59950	Predicted Affinity Capture-MS	FSW = 0.0126	Unknown	RNA AND EXPORT FACTOR-BINDING PROTEIN PUTATIVE
AT4G00520	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.1287	Unknown	ACYL-COA THIOESTERASE FAMILY PROTEIN
AT3G10920	Predicted Affinity Capture-MS	FSW = 0.0245	Unknown	MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1) METAL ION BINDING / SUPEROXIDE DISMUTASE
AT5G20950	Predicted Synthetic Lethality	FSW = 0.0094	Unknown	GLYCOSYL HYDROLASE FAMILY 3 PROTEIN
AT4G07820	Predicted Phenotypic Enhancement	FSW = 0.0224	Unknown	PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT3G51300	Predicted Phylogenetic profile method Co-expression	FSW = 0.0730	Unknown	ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1) GTP BINDING / GTPASE ACTIVATING PROTEIN BINDING / GTPASE/ PROTEIN BINDING
AT5G18380	Predicted Affinity Capture-MS Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western Co-purification	FSW = 0.1285	Unknown	40S RIBOSOMAL PROTEIN S16 (RPS16C)
AT2G17800	Predicted Affinity Capture-MS Phylogenetic profile method Co-expression	FSW = 0.0881	Unknown	ARAC1 GTP BINDING
AT3G28730	Predicted Phenotypic Enhancement	FSW = 0.0167	Unknown	ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT4G29430	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS two hybrid Reconstituted Complex Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Co-purification Reconstituted Complex co-fractionation Co-fractionation	FSW = 0.2247	Unknown	RPS15AE (RIBOSOMAL PROTEIN S15A E) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G54820	Predicted Synthetic Lethality Affinity Capture-MS	FSW = 0.0523	Unknown	PIP25 (PLASMA MEMBRANE INTRINSIC PROTEIN 25) WATER CHANNEL
AT3G12530	Predicted Affinity Capture-MS	FSW = 0.0406	Unknown	PSF2
AT4G10920	Predicted Affinity Capture-MS Affinity Capture-MS Affinity Capture-MS Co-purification Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Co-purification co-fractionation Co-fractionation	FSW = 0.1660	Unknown	KELP DNA BINDING / TRANSCRIPTION COACTIVATOR/ TRANSCRIPTION REGULATOR
AT1G04480	Predicted Affinity Capture-MS Reconstituted Complex Affinity Capture-MS interologs mapping Affinity Capture-Western Affinity Capture-MS Affinity Capture-MS Affinity Capture-Western interologs mapping synthetic growth defect Reconstituted Complex	FSW = 0.0889	Unknown	60S RIBOSOMAL PROTEIN L23 (RPL23A)
AT1G13950	Predicted Synthetic Rescue	FSW = 0.0118	Unknown	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) TRANSLATION INITIATION FACTOR
AT1G54560	Predicted Phenotypic Enhancement Synthetic Rescue	FSW = 0.0398	Unknown	XIE MOTOR/ PROTEIN BINDING
AT1G63370	Predicted Affinity Capture-MS Reconstituted Complex Affinity Capture-MS Affinity Capture-MS Co-purification Reconstituted Complex Reconstituted Complex Reconstituted Complex Affinity Capture-Western Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Affinity Capture-Western Affinity Capture-Western Affinity Capture-MS Co-purification co-fractionation Co-fractionation Phenotypic Enhancement	FSW = 0.2444	Unknown	FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G70290	Predicted Phenotypic Enhancement	FSW = 0.0365	Unknown	ATTPS8 ALPHAALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS / TREHALOSE-PHOSPHATASE
AT1G79210	Predicted Affinity Capture-MS	FSW = 0.0449	Unknown	20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT1G80460	Predicted Affinity Capture-MS Affinity Capture-Western	FSW = 0.0726	Unknown	NHO1 (NONHOST RESISTANCE TO P S PHASEOLICOLA 1) CARBOHYDRATE KINASE/ GLYCEROL KINASE
AT2G38490	Predicted Phenotypic Enhancement	FSW = 0.0145	Unknown	CIPK22 (CBL-INTERACTING PROTEIN KINASE 22) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE/ PROTEIN TYROSINE KINASE
AT2G47570	Predicted interologs mapping interologs mapping	FSW = 0.0145	Unknown	60S RIBOSOMAL PROTEIN L18 (RPL18A)
AT3G23570	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0716	Unknown	DIENELACTONE HYDROLASE FAMILY PROTEIN
AT3G27580	Predicted Affinity Capture-MS	FSW = 0.0051	Unknown	ATPK7 KINASE/ PROTEIN SERINE/THREONINE KINASE
AT3G50880	Predicted Affinity Capture-MS	FSW = 0.0386	Unknown	HHH-GPD BASE EXCISION DNA REPAIR FAMILY PROTEIN
AT3G59020	Predicted Affinity Capture-MS	FSW = 0.0316	Unknown	BINDING / PROTEIN TRANSPORTER
AT4G18593	Predicted Reconstituted Complex	FSW = 0.0489	Unknown	DUAL SPECIFICITY PROTEIN PHOSPHATASE-RELATED
AT5G08600	Predicted Affinity Capture-MS	FSW = 0.0162	Unknown	U3 RIBONUCLEOPROTEIN (UTP) FAMILY PROTEIN
AT5G13150	Predicted Affinity Capture-MS	FSW = 0.0480	Unknown	ATEXO70C1 (EXOCYST SUBUNIT EXO70 FAMILY PROTEIN C1) PROTEIN BINDING
AT5G15070	Predicted Affinity Capture-MS	FSW = 0.0125	Unknown	ACID PHOSPHATASE/ OXIDOREDUCTASE/ TRANSITION METAL ION BINDING
AT5G41190	Predicted Affinity Capture-MS	FSW = 0.0496	Unknown	FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 13 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S NIN ONE BINDING (NOB1) ZN-RIBBON LIKE (INTERPROIPR014881) D-SITE 20S PRE-RRNA NUCLEASE (INTERPROIPR017117) HAS 855 BLAST HITS TO 653 PROTEINS IN 196 SPECIES ARCHAE - 53 BACTERIA - 16 METAZOA - 335 FUNGI - 168 PLANTS - 29 VIRUSES - 10 OTHER EUKARYOTES - 244 (SOURCE NCBI BLINK)
AT5G45010	Predicted interologs mapping two hybrid	FSW = 0.0152	Unknown	ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V)
AT1G12390	Predicted Affinity Capture-MS	FSW = 0.0105	Unknown	CORNICHON FAMILY PROTEIN
AT1G20920	Predicted Affinity Capture-MS	FSW = 0.0883	Unknown	DEAD BOX RNA HELICASE PUTATIVE
AT1G25155	Predicted Affinity Capture-MS	FSW = 0.0262	Unknown	ANTHRANILATE SYNTHASE BETA SUBUNIT PUTATIVE
AT1G25500	Predicted Affinity Capture-MS	FSW = 0.0290	Unknown	CHOLINE TRANSPORTER-RELATED
AT1G34580	Predicted Affinity Capture-MS	FSW = 0.0339	Unknown	MONOSACCHARIDE TRANSPORTER PUTATIVE
AT1G59730	Predicted Affinity Capture-MS	FSW = 0.0113	Unknown	ATH7 (THIOREDOXIN H-TYPE 7)
AT1G66240	Predicted Affinity Capture-MS	FSW = 0.0092	Unknown	ATX1 (ARABIDOPSIS HOMOLOG OF ANTI-OXIDANT 1) METAL ION BINDING
AT2G17620	Predicted Affinity Capture-MS	FSW = 0.0567	Unknown	CYCB21 (CYCLIN B21) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT2G31260	Predicted Affinity Capture-MS	FSW = 0.0117	Unknown	APG9 (AUTOPHAGY 9)
AT3G09800	Predicted Affinity Capture-MS	FSW = 0.0042	Unknown	PROTEIN BINDING
AT3G26730	Predicted Affinity Capture-MS	FSW = 0.0254	Unknown	ZINC FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN
AT3G49880	Predicted Affinity Capture-MS	FSW = 0.0589	Unknown	GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT3G62760	Predicted Affinity Capture-MS	FSW = 0.0596	Unknown	ATGSTF13 GLUTATHIONE TRANSFERASE
AT4G27690	Predicted Affinity Capture-MS	FSW = 0.0409	Unknown	VPS26B (VACUOLAR PROTEIN SORTING 26B)
AT4G33200	Predicted Affinity Capture-MS	FSW = 0.0316	Unknown	XI-I MOTOR/ PROTEIN BINDING
AT5G01430	Predicted Affinity Capture-MS Affinity Capture-MS	FSW = 0.0237	Unknown	GOT1-LIKE FAMILY PROTEIN

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Fasta sequences:

Proteins

DNA

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from

Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment

Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment

Class C: Same as Class A but the PPI is predicted

Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB

Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

Welcome to AtPIN

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AT5G62880 - ( ARAC10 GTP binding )

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