Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G62920 - ( ARR6 (RESPONSE REGULATOR 6) transcription regulator/ two-component response regulator )

7 Proteins interacs with AT5G62920
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G65630

Experimental

two hybrid

FSW = 0.0800

Class A:

nucleus

Class D:

plastid (p = 0.78)

nucleus (p = 0.78)

GTE7 (GLOBAL TRANSCRIPTION FACTOR GROUP E 7) DNA BINDING
AT5G43170

Experimental

two hybrid

FSW = 0.1684

Class A:

nucleus

Class D:

nucleus (p = 0.78)

AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3) DNA BINDING / NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ TRANSCRIPTION REPRESSOR/ ZINC ION BINDING
AT1G67710

Experimental

pull down

FSW = 0.1817

Class D:

nucleus (p = 0.78)

ARR11 (RESPONSE REGULATOR 11) TRANSCRIPTION FACTOR/ TWO-COMPONENT RESPONSE REGULATOR
AT5G63460

Experimental

two hybrid

FSW = 0.1262

Unknown

SAP DOMAIN-CONTAINING PROTEIN
AT5G28490

Experimental

two hybrid

FSW = 0.1131

Unknown

LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)
AT1G27320

Experimental

FSW = 0.0233

Unknown

AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G19050

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.3344

Class C:

nucleus

ARR7 (RESPONSE REGULATOR 7) TRANSCRIPTION REGULATOR/ TWO-COMPONENT RESPONSE REGULATOR

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454