Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G63110 - ( HDA6 (HISTONE DEACETYLASE 6) histone deacetylase )

106 Proteins interacs with AT5G63110
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G62980

Experimental

FSW = 0.0067

Unknown

TIR1 (TRANSPORT INHIBITOR RESPONSE 1) AUXIN BINDING / PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT2G39940

Experimental

FSW = 0.0117

Unknown

COI1 (CORONATINE INSENSITIVE 1) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G60640

Predicted

two hybrid

Shared biological function

Co-expression

FSW = 0.0039

Class C:

plastid

ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE
AT3G02520

Predicted

Affinity Capture-Western

Synthetic Rescue

FSW = 0.0427

Class C:

plastid

GRF7 (GENERAL REGULATORY FACTOR 7) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G59690Predicted

Phenotypic Suppression

FSW = 0.1271

Class C:

plastid

HISTONE H4
AT5G64270

Predicted

Affinity Capture-MS

FSW = 0.0038

Class C:

plastid

SPLICING FACTOR PUTATIVE
AT5G16630

Predicted

Phenotypic Suppression

FSW = 0.0473

Class C:

plastid

RAD4 DAMAGED DNA BINDING
AT1G18640

Predicted

Phenotypic Suppression

FSW = 0.1482

Class C:

plastid

PSP (3-PHOSPHOSERINE PHOSPHATASE) PHOSPHOSERINE PHOSPHATASE
AT3G54900

Predicted

Affinity Capture-MS

FSW = 0.0210

Class C:

plastid

CXIP1 (CAX INTERACTING PROTEIN 1) ANTIPORTER/ GLUTATHIONE DISULFIDE OXIDOREDUCTASE
AT1G67430

Predicted

Affinity Capture-MS

FSW = 0.0043

Unknown

60S RIBOSOMAL PROTEIN L17 (RPL17B)
AT5G45130

Predicted

Phenotypic Enhancement

FSW = 0.0414

Unknown

RHA1 (RAB HOMOLOG 1) GTP BINDING
AT1G64790Predicted

Phenotypic Enhancement

FSW = 0.0879

Unknown

BINDING
AT3G22110

Predicted

Phenotypic Enhancement

FSW = 0.0462

Unknown

PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE
AT4G01370

Predicted

Phenotypic Suppression

FSW = 0.0370

Unknown

ATMPK4 (ARABIDOPSIS THALIANA MAP KINASE 4) MAP KINASE/ KINASE
AT5G38480

Predicted

Affinity Capture-Western

FSW = 0.0199

Unknown

GRF3 (GENERAL REGULATORY FACTOR 3) ATP BINDING / PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT4G38740

Predicted

Affinity Capture-Western

FSW = 0.0371

Unknown

ROC1 (ROTAMASE CYP 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT1G11890

Predicted

Phenotypic Enhancement

FSW = 0.1698

Unknown

SEC22 TRANSPORTER
AT1G79920

Predicted

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0165

Unknown

ATP BINDING
AT1G74270

Predicted

Affinity Capture-MS

FSW = 0.0126

Unknown

60S RIBOSOMAL PROTEIN L35A (RPL35AC)
AT1G24510

Predicted

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0094

Unknown

T-COMPLEX PROTEIN 1 EPSILON SUBUNIT PUTATIVE / TCP-1-EPSILON PUTATIVE / CHAPERONIN PUTATIVE
AT2G18040

Predicted

Affinity Capture-Western

Synthetic Rescue

interologs mapping

FSW = 0.0277

Unknown

PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT5G02490

Predicted

Reconstituted Complex

Affinity Capture-MS

FSW = 0.0090

Unknown

HEAT SHOCK COGNATE 70 KDA PROTEIN 2 (HSC70-2) (HSP70-2)
AT5G19180

Predicted

Phenotypic Suppression

FSW = 0.0798

Unknown

ECR1 (E1 C-TERMINAL RELATED 1) NEDD8 ACTIVATING ENZYME/ PROTEIN HETERODIMERIZATION/ SMALL PROTEIN ACTIVATING ENZYME
AT2G44680

Predicted

Affinity Capture-MS

FSW = 0.0824

Unknown

CKB4 (CASEIN KINASE II BETA SUBUNIT 4) PROTEIN SERINE/THREONINE KINASE
AT5G67270

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1566

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT4G38130

Predicted

Shared biological function

Phylogenetic profile method

Co-expression

FSW = 0.2079

Unknown

HD1 (HISTONE DEACETYLASE 1) BASAL TRANSCRIPTION REPRESSOR/ HISTONE DEACETYLASE/ PROTEIN BINDING
AT3G54610

Predicted

Synthetic Rescue

Synthetic Rescue

Phenotypic Enhancement

FSW = 0.1103

Unknown

GCN5 DNA BINDING / H3 HISTONE ACETYLTRANSFERASE/ HISTONE ACETYLTRANSFERASE
AT3G12810

Predicted

Phenotypic Enhancement

FSW = 0.1857

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G52250

Predicted

Reconstituted Complex

Co-purification

Reconstituted Complex

Co-purification

co-fractionation

Co-fractionation

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

two hybrid

in vivo

in vitro

Affinity Capture-MS

Co-purification

co-fractionation

Co-fractionation

FSW = 0.0146

Unknown

DNA BINDING / TRANSCRIPTION FACTOR
AT5G19840Predicted

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0367

Unknown

TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN
AT4G10710

Predicted

synthetic growth defect

FSW = 0.0848

Unknown

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT1G02740

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Phenotypic Suppression

FSW = 0.0997

Unknown

CHROMATIN BINDING
AT5G04240

Predicted

Reconstituted Complex

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0327

Unknown

ELF6 (EARLY FLOWERING 6) TRANSCRIPTION FACTOR
AT5G60410

Predicted

in vitro

Affinity Capture-MS

FSW = 0.0240

Unknown

SIZ1 DNA BINDING / SUMO LIGASE
AT2G23740

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0524

Unknown

NUCLEIC ACID BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT2G36740

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2053

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G38560

Predicted

Phenotypic Enhancement

FSW = 0.1636

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT1G65470

Predicted

Synthetic Rescue

FSW = 0.1011

Unknown

FAS1 (FASCIATA 1) HISTONE BINDING
AT5G17020

Predicted

Affinity Capture-Western

FSW = 0.0044

Unknown

XPO1A PROTEIN BINDING / PROTEIN TRANSPORTER/ RECEPTOR
AT5G18620

Predicted

synthetic growth defect

synthetic growth defect

FSW = 0.0291

Unknown

CHR17 (CHROMATIN REMODELING FACTOR17) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ HELICASE/ HYDROLASE ACTING ON ACID ANHYDRIDES IN PHOSPHORUS-CONTAINING ANHYDRIDES / NUCLEIC ACID BINDING / NUCLEOSOME BINDING
AT2G44950

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1901

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT4G22220

Predicted

interologs mapping

FSW = 0.0105

Unknown

ISU1 STRUCTURAL MOLECULE
AT2G31970

Predicted

Phenotypic Enhancement

FSW = 0.1280

Unknown

RAD50 ATP BINDING / NUCLEASE/ ZINC ION BINDING
AT5G19910

Predicted

Phenotypic Enhancement

FSW = 0.2209

Unknown

SOH1 FAMILY PROTEIN
AT3G28730

Predicted

Synthetic Rescue

Synthetic Lethality

FSW = 0.0730

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT2G22310

Predicted

Phenotypic Suppression

FSW = 0.0186

Unknown

ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4) UBIQUITIN-SPECIFIC PROTEASE
AT5G54260

Predicted

Phenotypic Enhancement

FSW = 0.1554

Unknown

MRE11 (MEIOTIC RECOMBINATION 11) ENDONUCLEASE/ EXONUCLEASE/ HYDROLASE/ MANGANESE ION BINDING / PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G38470

Predicted

Phenotypic Enhancement

FSW = 0.0223

Unknown

DNA REPAIR PROTEIN RAD23 PUTATIVE
AT5G41480

Predicted

interologs mapping

FSW = 0.0031

Unknown

GLA1 (GLOBULAR ARREST1) DIHYDROFOLATE SYNTHASE
AT5G40820

Predicted

Synthetic Rescue

FSW = 0.0502

Unknown

ATRAD3 BINDING / INOSITOL OR PHOSPHATIDYLINOSITOL KINASE/ PHOSPHOTRANSFERASE ALCOHOL GROUP AS ACCEPTOR / PROTEIN SERINE/THREONINE KINASE
AT3G20050

Predicted

Affinity Capture-Western

Reconstituted Complex

FSW = 0.0149

Unknown

ATTCP-1 ATP BINDING / PROTEIN BINDING / UNFOLDED PROTEIN BINDING
AT5G20850

Predicted

Phenotypic Enhancement

FSW = 0.0632

Unknown

ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING
AT3G29330

Predicted

two hybrid

FSW = 0.0183

Unknown

UNKNOWN PROTEIN
AT1G01510

Predicted

Reconstituted Complex

FSW = 0.0271

Unknown

AN (ANGUSTIFOLIA) PROTEIN BINDING
AT3G12280

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

FSW = 0.0116

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT4G11330

Predicted

far western blotting

Reconstituted Complex

two hybrid

Affinity Capture-MS

FSW = 0.0089

Unknown

ATMPK5 (MAP KINASE 5) MAP KINASE/ KINASE
AT5G61070

Predicted

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Reconstituted Complex

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Reconstituted Complex

Affinity Capture-Western

co-fractionation

Co-fractionation

FSW = 0.0928

Unknown

HDA18 H3/H4 HISTONE ACETYLTRANSFERASE/ HISTONE DEACETYLASE
AT5G67320

Predicted

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Affinity Capture-MS

Phenotypic Enhancement

FSW = 0.1072

Unknown

HOS15 (HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 15)
AT1G29990

Predicted

Phenotypic Suppression

FSW = 0.1337

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G34150

Predicted

Phenotypic Suppression

FSW = 0.0793

Unknown

TRNA PSEUDOURIDINE SYNTHASE FAMILY PROTEIN
AT1G49540

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1246

Unknown

NUCLEOTIDE BINDING
AT1G51710

Predicted

Phenotypic Enhancement

FSW = 0.1522

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT1G52740

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2089

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G59890

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Co-purification

Phenotypic Suppression

FSW = 0.4322

Unknown

SNL5 (SIN3-LIKE 5)
AT1G73570

Predicted

interologs mapping

FSW = 0.0335

Unknown

SUPPRESSOR OF LIN-12-LIKE PROTEIN-RELATED / SEL-1 PROTEIN-RELATED
AT2G15790

Predicted

two hybrid

Reconstituted Complex

FSW = 0.0109

Unknown

SQN (SQUINT) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT2G43790

Predicted

Affinity Capture-Western

FSW = 0.0262

Unknown

ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT3G07270

Predicted

interologs mapping

FSW = 0.0172

Unknown

GTP CYCLOHYDROLASE I
AT3G18860

Predicted

Phenotypic Enhancement

FSW = 0.1988

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G20800

Predicted

Phenotypic Enhancement

FSW = 0.0913

Unknown

RCD1-LIKE CELL DIFFERENTIATION PROTEIN PUTATIVE
AT3G22590

Predicted

Phenotypic Enhancement

FSW = 0.1539

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G24200

Predicted

Affinity Capture-MS

FSW = 0.0524

Unknown

FAD BINDING / MONOOXYGENASE/ OXIDOREDUCTASE/ OXIDOREDUCTASE ACTING ON PAIRED DONORS WITH INCORPORATION OR REDUCTION OF MOLECULAR OXYGEN NADH OR NADPH AS ONE DONOR AND INCORPORATION OF ONE ATOM OF OXYGEN
AT3G54380

Predicted

Phenotypic Enhancement

FSW = 0.1592

Unknown

SAC3/GANP FAMILY PROTEIN
AT3G55170

Predicted

Affinity Capture-MS

FSW = 0.0262

Unknown

60S RIBOSOMAL PROTEIN L35 (RPL35C)
AT4G09140

Predicted

Phenotypic Enhancement

FSW = 0.0190

Unknown

MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING
AT4G15475

Predicted

interologs mapping

FSW = 0.0319

Unknown

F-BOX FAMILY PROTEIN (FBL4)
AT4G33100

Predicted

Phenotypic Enhancement

FSW = 0.0795

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 23 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S MITOCHONDRIAL DISTRIBUTION AND MORPHOLOGY FAMILY 35/APOPTOSIS (INTERPROIPR007918) HAS 160 BLAST HITS TO 160 PROTEINS IN 70 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 95 FUNGI - 46 PLANTS - 13 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK)
AT4G33240

Predicted

Phenotypic Enhancement

FSW = 0.1975

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT4G38630

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.0888

Unknown

RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR
AT5G02310

Predicted

interologs mapping

FSW = 0.0555

Unknown

PRT6 (PROTEOLYSIS 6) UBIQUITIN-PROTEIN LIGASE
AT5G10260

Predicted

Phenotypic Suppression

FSW = 0.1366

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G27970Predicted

Phenotypic Enhancement

FSW = 0.1137

Unknown

BINDING
AT5G55310

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0800

Unknown

TOP1BETA (DNA TOPOISOMERASE 1 BETA) DNA TOPOISOMERASE TYPE I
AT1G54140

Predicted

Synthetic Lethality

FSW = 0.0762

Unknown

TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR
AT1G66740

Predicted

synthetic growth defect

FSW = 0.1794

Unknown

SGA2
AT1G80410

Predicted

synthetic growth defect

FSW = 0.0885

Unknown

EMB2753 (EMBRYO DEFECTIVE 2753) BINDING
AT2G02760

Predicted

Synthetic Rescue

synthetic growth defect

FSW = 0.2023

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT3G01090

Predicted

Phenotypic Enhancement

FSW = 0.1013

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G18520

Predicted

Phenotypic Enhancement

FSW = 0.1888

Unknown

HDA15 HISTONE DEACETYLASE
AT3G25100

Predicted

Affinity Capture-MS

FSW = 0.0697

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT3G49660

Predicted

Affinity Capture-Western

Affinity Capture-Western

FSW = 0.1750

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G58560

Predicted

synthetic growth defect

FSW = 0.1247

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT4G10310

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.0661

Unknown

HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) SODIUM ION TRANSMEMBRANE TRANSPORTER
AT4G31120

Predicted

Synthetic Lethality

FSW = 0.0231

Unknown

SKB1 (SHK1 BINDING PROTEIN 1) PROTEIN METHYLTRANSFERASE
AT5G10400Predicted

Synthetic Rescue

FSW = 0.1659

Unknown

HISTONE H3
AT5G10960

Predicted

Synthetic Lethality

FSW = 0.1050

Unknown

CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE
AT5G13780

Predicted

synthetic growth defect

FSW = 0.1417

Unknown

GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE
AT5G43500

Predicted

Phenotypic Suppression

FSW = 0.2036

Unknown

ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G50320

Predicted

Synthetic Lethality

FSW = 0.1259

Unknown

ELO3 (ELONGATA 3) HISTONE ACETYLTRANSFERASE
AT5G61150

Predicted

Phenotypic Enhancement

FSW = 0.1614

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G65980

Predicted

interologs mapping

FSW = 0.0054

Unknown

AUXIN EFFLUX CARRIER FAMILY PROTEIN
AT3G44680

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0327

Unknown

HDA9 (HISTONE DEACETYLASE 9) HISTONE DEACETYLASE
AT5G35600

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.0321

Unknown

HDA7 (HISTONE DEACETYLASE7) HISTONE DEACETYLASE
AT3G26500

Predicted

Gene fusion method

FSW = 0.0223

Unknown

LEUCINE-RICH REPEAT FAMILY PROTEIN
AT1G53330

Predicted

Gene fusion method

FSW = 0.0320

Unknown

PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN
AT3G02300

Predicted

Gene fusion method

FSW = 0.0320

Unknown

REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454