Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G63310 - ( NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2) ATP binding / nucleoside diphosphate kinase/ protein binding )
27 Proteins interacs with AT5G63310Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G09570 | ExperimentalAffinity Capture-WesternReconstituted ComplexReconstituted ComplexAffinity Capture-Westernin vitrotwo hybridin vitro | FSW = 0.0465
| Class A:nucleusClass B:unclearplastidcytosolClass D:plastid (p = 0.78)mitochondrion (p = 0.82)cytosol (p = 0.67) | PHYA (PHYTOCHROME A) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
AT2G18790 | ExperimentalReconstituted ComplexAffinity Capture-Westernin vitro | FSW = 0.0352
| Class A:nucleusClass B:unclearplastidcytosolClass D:plastid (p = 0.78)cytosol (p = 0.67) | PHYB (PHYTOCHROME B) G-PROTEIN COUPLED PHOTORECEPTOR/ PROTEIN HISTIDINE KINASE/ RED OR FAR-RED LIGHT PHOTORECEPTOR/ SIGNAL TRANSDUCER |
AT5G63870 | Experimentaltwo hybrid | FSW = 0.0282
| Class A:nucleusClass B:unclearplastidClass D:cytosol (p = 0.67) | PP7 (SERINE/THREONINE PHOSPHATASE 7) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G01820 | Experimental | FSW = 0.0400
| Class B:vacuoleunclearplastidnucleusClass D:cytosol (p = 0.67) | ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G26300 | ExperimentalReconstituted Complexin vitro | FSW = 0.0099
| Class B:unclearplastidplasma membranenucleusClass D:cytosol (p = 0.67) | GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1) GTP BINDING / GTPASE/ CHANNEL REGULATOR/ SIGNAL TRANSDUCER |
AT5G20850 | Experimental | FSW = 0.0058
| Class D:cytosol (p = 0.67) | ATRAD51 ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING / SEQUENCE-SPECIFIC DNA BINDING |
AT3G45640 | Experimentalpull downtwo hybridReconstituted Complex | FSW = 0.0387
| Unknown | ATMPK3 (ARABIDOPSIS THALIANA MITOGEN-ACTIVATED PROTEIN KINASE 3) MAP KINASE/ KINASE/ PROTEIN BINDING / PROTEIN KINASE |
AT2G43790 | Experimentaltwo hybrid | FSW = 0.0145
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT5G35410 | Experimentalpull down | FSW = 0.0144
| Unknown | SOS2 (SALT OVERLY SENSITIVE 2) KINASE/ PROTEIN KINASE |
AT1G28480 | Experimental | FSW = 0.0324
| Unknown | GRX480 ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE |
AT5G67630 | PredictedAffinity Capture-MS | FSW = 0.0067
| Class C:plastidnucleus | DNA HELICASE PUTATIVE |
AT5G42080 | PredictedPhenotypic Enhancement | FSW = 0.0281
| Class C:plastid | ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN) GTP BINDING / GTPASE/ PROTEIN BINDING |
AT2G35040 | PredictedAffinity Capture-MS | FSW = 0.0296
| Class C:plastid | AICARFT/IMPCHASE BIENZYME FAMILY PROTEIN |
AT2G32920 | PredictedAffinity Capture-MS | FSW = 0.0444
| Unknown | ATPDIL2-3 (PDI-LIKE 2-3) PROTEIN DISULFIDE ISOMERASE |
AT5G49460 | PredictedAffinity Capture-MS | FSW = 0.0444
| Unknown | ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2) ATP CITRATE SYNTHASE |
AT1G16470 | PredictedAffinity Capture-MS | FSW = 0.0111
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0145
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT3G52560 | Predictedtwo hybrid | FSW = 0.0298
| Unknown | UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT4G14385 | Predictedtwo hybrid | FSW = 0.1067
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN VACUOLE EXPRESSED IN 24 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S HISTONE H4 ACETYLTRANSFERASE NUA4 COMPLEX EAF6 (INTERPROIPR015418) HAS 245 BLAST HITS TO 245 PROTEINS IN 100 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 126 FUNGI - 60 PLANTS - 29 VIRUSES - 0 OTHER EUKARYOTES - 30 (SOURCE NCBI BLINK) |
AT5G58575 | Predictedtwo hybrid | FSW = 0.0254
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 11 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SGF11 TRANSCRIPTIONAL REGULATION (INTERPROIPR013246) HAS 148 BLAST HITS TO 148 PROTEINS IN 67 SPECIES ARCHAE - 0 BACTERIA - 0 METAZOA - 94 FUNGI - 32 PLANTS - 16 VIRUSES - 0 OTHER EUKARYOTES - 6 (SOURCE NCBI BLINK) |
AT3G59540 | PredictedAffinity Capture-MS | FSW = 0.0080
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT3G59600 | PredictedAffinity Capture-MS | FSW = 0.0968
| Unknown | NRPB8B DNA-DIRECTED RNA POLYMERASE |
AT4G08320 | Predictedtwo hybrid | FSW = 0.0228
| Unknown | TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN |
AT4G12400 | PredictedAffinity Capture-MS | FSW = 0.0222
| Unknown | STRESS-INDUCIBLE PROTEIN PUTATIVE |
AT4G24710 | Predictedtwo hybrid | FSW = 0.0157
| Unknown | ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT5G19680 | PredictedAffinity Capture-MS | FSW = 0.0167
| Unknown | LEUCINE-RICH REPEAT FAMILY PROTEIN |
AT5G47790 | PredictedAffinity Capture-MS | FSW = 0.0410
| Unknown | FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454