Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G63400 - ( ADK1 (ADENYLATE KINASE 1) ATP binding / adenylate kinase/ nucleobase nucleoside nucleotide kinase/ nucleotide kinase/ phosphotransferase phosphate group as acceptor )

118 Proteins interacs with AT5G63400
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G50370

Predicted

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.1759

Class C:

vacuole

unclear

mitochondrion

ADENYLATE KINASE PUTATIVE
AT3G16480

Predicted

Affinity Capture-MS

FSW = 0.0085

Class C:

vacuole

unclear

mitochondrion

MPPALPHA (MITOCHONDRIAL PROCESSING PEPTIDASE ALPHA SUBUNIT) CATALYTIC/ METAL ION BINDING / METALLOENDOPEPTIDASE/ ZINC ION BINDING
AT4G14960

Predicted

two hybrid

FSW = 0.0053

Class C:

vacuole

unclear

TUA6 STRUCTURAL CONSTITUENT OF CYTOSKELETON
AT1G23190

Predicted

two hybrid

FSW = 0.0188

Class C:

vacuole

PHOSPHOGLUCOMUTASE CYTOPLASMIC PUTATIVE / GLUCOSE PHOSPHOMUTASE PUTATIVE
AT3G49010

Predicted

biochemical

FSW = 0.0055

Class C:

vacuole

ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1) STRUCTURAL CONSTITUENT OF RIBOSOME
AT3G08710

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0374

Class C:

vacuole

ATH9 (THIOREDOXIN H-TYPE 9)
AT3G60640

Predicted

biochemical

FSW = 0.0164

Class C:

vacuole

ATG8G (AUTOPHAGY 8G) MICROTUBULE BINDING
AT3G62870

Predicted

synthetic growth defect

FSW = 0.0371

Class C:

vacuole

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT5G01820

Predicted

Synthetic Rescue

FSW = 0.0102

Class C:

vacuole

ATSR1 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G26030

Predicted

Synthetic Rescue

FSW = 0.0177

Class C:

unclear

mitochondrion

FC1 (FERROCHELATASE 1) FERROCHELATASE
AT2G37250

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0175

Class C:

unclear

ADK (ADENOSINE KINASE) ADENYLATE KINASE/ NUCLEOTIDE KINASE
AT4G33650

Predicted

two hybrid

synthetic growth defect

FSW = 0.0338

Class C:

mitochondrion

DRP3A (DYNAMIN-RELATED PROTEIN 3A) GTP BINDING / GTPASE/ PHOSPHOINOSITIDE BINDING
AT5G23140

Predicted

pull down

FSW = 0.0121

Class C:

mitochondrion

NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7) SERINE-TYPE ENDOPEPTIDASE
AT4G28220

Predicted

Affinity Capture-MS

FSW = 0.0844

Class C:

mitochondrion

NDB1 (NAD(P)H DEHYDROGENASE B1) NADH DEHYDROGENASE/ DISULFIDE OXIDOREDUCTASE
AT4G12590

Predicted

biochemical

FSW = 0.0148

Class C:

mitochondrion

UNKNOWN PROTEIN
AT4G28060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1691

Class C:

mitochondrion

CYTOCHROME C OXIDASE SUBUNIT 6B PUTATIVE
AT1G70190

Predicted

biochemical

FSW = 0.0105

Class C:

mitochondrion

RIBOSOMAL PROTEIN L12 FAMILY PROTEIN
AT2G17270

Predicted

biochemical

FSW = 0.0179

Class C:

mitochondrion

MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN
AT2G18450

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0287

Class C:

mitochondrion

SDH1-2 SUCCINATE DEHYDROGENASE
AT5G01410

Predicted

interologs mapping

FSW = 0.0155

Unknown

RSR4 (REDUCED SUGAR RESPONSE 4) PROTEIN HETERODIMERIZATION/ PROTEIN HOMODIMERIZATION
AT1G07890

Predicted

two hybrid

Affinity Capture-Western

FSW = 0.0310

Unknown

APX1 (ASCORBATE PEROXIDASE 1) L-ASCORBATE PEROXIDASE
AT2G30390

Predicted

interaction prediction

FSW = 0.0250

Unknown

FC2 (FERROCHELATASE 2) FERROCHELATASE
AT5G55220

Predicted

pull down

FSW = 0.0329

Unknown

TRIGGER FACTOR TYPE CHAPERONE FAMILY PROTEIN
AT5G53480

Predicted

two hybrid

Synthetic Rescue

interologs mapping

interologs mapping

interologs mapping

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

two hybrid

Synthetic Rescue

two hybrid

two hybrid

two hybrid

Affinity Capture-Western

Affinity Capture-Western

two hybrid

Reconstituted Complex

interologs mapping

Synthetic Rescue

Phenotypic Suppression

biochemical

FSW = 0.0250

Unknown

IMPORTIN BETA-2 PUTATIVE
AT2G25140

Predicted

Affinity Capture-MS

FSW = 0.0066

Unknown

CLPB4 (CASEIN LYTIC PROTEINASE B4) ATP BINDING / ATPASE/ NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT4G01900

Predicted

pull down

FSW = 0.0141

Unknown

GLB1 (GLNB1 HOMOLOG) ACETYLGLUTAMATE KINASE REGULATOR
AT4G38200Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1619

Unknown

GUANINE NUCLEOTIDE EXCHANGE FAMILY PROTEIN
AT5G06290

Predicted

Synthetic Lethality

FSW = 0.0702

Unknown

2-CYS PRX B (2-CYSTEINE PEROXIREDOXIN B) ANTIOXIDANT/ PEROXIREDOXIN
AT4G30950

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2024

Unknown

FAD6 (FATTY ACID DESATURASE 6) OMEGA-6 FATTY ACID DESATURASE
AT1G10070

Predicted

biochemical

Phenotypic Enhancement

FSW = 0.0143

Unknown

ATBCAT-2 (ARABIDOPSIS THALIANA BRANCHED-CHAIN AMINO ACID TRANSAMINASE 2) BRANCHED-CHAIN-AMINO-ACID TRANSAMINASE/ CATALYTIC
AT1G26160

Predicted

Synthetic Rescue

FSW = 0.0288

Unknown

METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
ATCG00180Predicted

pull down

FSW = 0.0130

Unknown

RNA POLYMERASE BETA SUBUNIT-1
AT5G62880

Predicted

Affinity Capture-Western

Affinity Capture-Western

Reconstituted Complex

Phenotypic Enhancement

Synthetic Rescue

interologs mapping

FSW = 0.0261

Unknown

ARAC10 GTP BINDING
AT5G64740

Predicted

Phenotypic Enhancement

FSW = 0.0269

Unknown

CESA6 (CELLULOSE SYNTHASE 6) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G27450

Predicted

biochemical

FSW = 0.0197

Unknown

APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1) ADENINE PHOSPHORIBOSYLTRANSFERASE
AT4G36490

Predicted

biochemical

FSW = 0.0226

Unknown

SFH12 (SEC14-LIKE 12) PHOSPHATIDYLINOSITOL TRANSPORTER/ TRANSPORTER
AT5G52640

Predicted

pull down

FSW = 0.0143

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT1G22180

Predicted

Affinity Capture-MS

FSW = 0.0576

Unknown

SEC14 CYTOSOLIC FACTOR FAMILY PROTEIN / PHOSPHOGLYCERIDE TRANSFER FAMILY PROTEIN
AT4G11380

Predicted

synthetic growth defect

FSW = 0.0059

Unknown

BETA-ADAPTIN PUTATIVE
AT4G33090

Predicted

Affinity Capture-MS

FSW = 0.0521

Unknown

APM1 (AMINOPEPTIDASE M1) AMINOPEPTIDASE
AT4G29360

Predicted

Affinity Capture-MS

FSW = 0.0094

Unknown

GLYCOSYL HYDROLASE FAMILY 17 PROTEIN
AT3G25540

Predicted

synthetic growth defect

FSW = 0.0486

Unknown

LAG1
AT2G29140

Predicted

Affinity Capture-MS

FSW = 0.0974

Unknown

APUM3 (ARABIDOPSIS PUMILIO 3) RNA BINDING / BINDING
AT4G00520

Predicted

Affinity Capture-MS

FSW = 0.0256

Unknown

ACYL-COA THIOESTERASE FAMILY PROTEIN
AT3G60180

Predicted

Enriched domain pair

Phylogenetic profile method

Co-expression

FSW = 0.0403

Unknown

URIDYLATE KINASE PUTATIVE / URIDINE MONOPHOSPHATE KINASE PUTATIVE / UMP KINASE PUTATIVE
AT2G30260

Predicted

biochemical

FSW = 0.0021

Unknown

U2B (U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT4G29510

Predicted

biochemical

FSW = 0.0080

Unknown

PRMT11 (ARGININE METHYLTRANSFERASE 11) PROTEIN-ARGININE N-METHYLTRANSFERASE
AT5G06550

Predicted

two hybrid

two hybrid

Co-expression

FSW = 0.0184

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN CELL SURFACE RECEPTOR LINKED SIGNAL TRANSDUCTION EXPRESSED IN 19 PLANT STRUCTURES EXPRESSED DURING 12 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S CYCLIN-LIKE F-BOX (INTERPROIPR001810) TRANSCRIPTION FACTOR JUMONJI/ASPARTYL BETA-HYDROXYLASE (INTERPROIPR003347) TRANSCRIPTION FACTOR JUMONJI (INTERPROIPR013129) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS TRANSFERASE TRANSFERRING GLYCOSYL GROUPS (TAIRAT1G782801) HAS 1299 BLAST HITS TO 1289 PROTEINS IN 204 SPECIES ARCHAE - 0 BACTERIA - 195 METAZOA - 777 FUNGI - 106 PLANTS - 94 VIRUSES - 0 OTHER EUKARYOTES - 127 (SOURCE NCBI BLINK)
AT5G54840

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0102

Unknown

SGP1 GTP BINDING
AT2G47620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0823

Unknown

ATSWI3A (SWITCH/SUCROSE NONFERMENTING 3A) DNA BINDING
AT1G60850

Predicted

biochemical

FSW = 0.0184

Unknown

ATRPAC42 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT4G34430

Predicted

Affinity Capture-MS

FSW = 0.0101

Unknown

CHB3 DNA BINDING / TRANSCRIPTION FACTOR/ ZINC ION BINDING
AT3G07260

Predicted

two hybrid

FSW = 0.0133

Unknown

FORKHEAD-ASSOCIATED DOMAIN-CONTAINING PROTEIN / FHA DOMAIN-CONTAINING PROTEIN
AT1G50060

Predicted

Affinity Capture-MS

FSW = 0.0817

Unknown

PATHOGENESIS-RELATED PROTEIN PUTATIVE
AT2G03120

Predicted

biochemical

FSW = 0.0311

Unknown

ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE
AT3G22880

Predicted

Affinity Capture-MS

FSW = 0.0105

Unknown

DMC1 (DISRUPTION OF MEIOTIC CONTROL 1) ATP BINDING / DNA BINDING / DNA-DEPENDENT ATPASE/ DAMAGED DNA BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING / PROTEIN BINDING
AT1G05180

Predicted

Affinity Capture-MS

FSW = 0.0129

Unknown

AXR1 (AUXIN RESISTANT 1) SMALL PROTEIN ACTIVATING ENZYME
AT4G21160

Predicted

Affinity Capture-MS

FSW = 0.0184

Unknown

ZAC ARF GTPASE ACTIVATOR/ PHOSPHOLIPID BINDING
AT1G77990

Predicted

biochemical

FSW = 0.0195

Unknown

AST56 SULFATE TRANSMEMBRANE TRANSPORTER
AT3G13320

Predicted

biochemical

FSW = 0.0123

Unknown

CAX2 (CATION EXCHANGER 2) CALCIUMCATION ANTIPORTER/ CALCIUMHYDROGEN ANTIPORTER
AT4G26840

Predicted

Affinity Capture-MS

FSW = 0.0097

Unknown

SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1) PROTEIN BINDING / PROTEIN TAG
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0039

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT1G07950

Predicted

two hybrid

FSW = 0.0132

Unknown

SURFEIT LOCUS PROTEIN 5 FAMILY PROTEIN / SURF5 FAMILY PROTEIN
AT5G02820

Predicted

two hybrid

FSW = 0.0168

Unknown

RHL2 (ROOT HAIRLESS 2) ATP BINDING / DNA BINDING / DNA TOPOISOMERASE (ATP-HYDROLYZING)/ IDENTICAL PROTEIN BINDING / PROTEIN BINDING
AT1G77670

Predicted

pull down

FSW = 0.0102

Unknown

AMINOTRANSFERASE CLASS I AND II FAMILY PROTEIN
AT5G23230

Predicted

pull down

FSW = 0.0073

Unknown

NIC2 (NICOTINAMIDASE 2) CATALYTIC/ NICOTINAMIDASE
AT1G05000

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0501

Unknown

TYROSINE SPECIFIC PROTEIN PHOSPHATASE FAMILY PROTEIN
AT1G07340

Predicted

biochemical

FSW = 0.0155

Unknown

ATSTP2 (SUGAR TRANSPORTER 2) CARBOHYDRATE TRANSMEMBRANE TRANSPORTER/ MONOSACCHARIDE TRANSMEMBRANE TRANSPORTER/ SUGARHYDROGEN SYMPORTER
AT1G10210

Predicted

Synthetic Rescue

FSW = 0.0388

Unknown

ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1) MAP KINASE/ KINASE
AT1G11475

Predicted

biochemical

FSW = 0.0145

Unknown

NRPB10 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G15240

Predicted

biochemical

FSW = 0.0118

Unknown

PHOX (PX) DOMAIN-CONTAINING PROTEIN
AT1G20920

Predicted

biochemical

FSW = 0.0219

Unknown

DEAD BOX RNA HELICASE PUTATIVE
AT1G23480

Predicted

biochemical

FSW = 0.0347

Unknown

ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT1G34460Predicted

biochemical

FSW = 0.0325

Unknown

CYCB15 (CYCLIN B15) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT1G63370

Predicted

Affinity Capture-MS

FSW = 0.0206

Unknown

FLAVIN-CONTAINING MONOOXYGENASE FAMILY PROTEIN / FMO FAMILY PROTEIN
AT1G67300

Predicted

biochemical

FSW = 0.0179

Unknown

HEXOSE TRANSPORTER PUTATIVE
AT1G79210

Predicted

Affinity Capture-Western

FSW = 0.0132

Unknown

20S PROTEASOME ALPHA SUBUNIT B PUTATIVE
AT1G80530

Predicted

Affinity Capture-Western

two hybrid

Synthetic Rescue

FSW = 0.0274

Unknown

NODULIN FAMILY PROTEIN
AT1G80710

Predicted

Affinity Capture-Western

FSW = 0.0120

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT2G06040

Predicted

biochemical

FSW = 0.0186

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 17 PLANT STRUCTURES EXPRESSED DURING 10 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S LEUCINE-RICH REPEAT CYSTEINE-CONTAINING SUBTYPE (INTERPROIPR006553) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G219001) HAS 3642 BLAST HITS TO 1885 PROTEINS IN 175 SPECIES ARCHAE - 0 BACTERIA - 109 METAZOA - 2066 FUNGI - 492 PLANTS - 697 VIRUSES - 0 OTHER EUKARYOTES - 278 (SOURCE NCBI BLINK)
AT2G14560

Predicted

biochemical

FSW = 0.0197

Unknown

LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)
AT2G31760

Predicted

Affinity Capture-MS

FSW = 0.0606

Unknown

ZINC FINGER PROTEIN-RELATED
AT2G31900

Predicted

biochemical

FSW = 0.0083

Unknown

XIF MOTOR
AT2G32220

Predicted

biochemical

FSW = 0.0218

Unknown

60S RIBOSOMAL PROTEIN L27 (RPL27A)
AT2G34890

Predicted

biochemical

FSW = 0.0130

Unknown

CTP SYNTHASE PUTATIVE / UTP--AMMONIA LIGASE PUTATIVE
AT2G37540

Predicted

biochemical

FSW = 0.0130

Unknown

SHORT-CHAIN DEHYDROGENASE/REDUCTASE (SDR) FAMILY PROTEIN
AT2G43190

Predicted

Affinity Capture-Western

FSW = 0.0084

Unknown

RIBONUCLEASE P FAMILY PROTEIN
AT2G46710

Predicted

biochemical

FSW = 0.0034

Unknown

RAC GTPASE ACTIVATING PROTEIN PUTATIVE
AT2G47090

Predicted

biochemical

FSW = 0.0313

Unknown

NUCLEIC ACID BINDING / PROTEIN BINDING / ZINC ION BINDING
AT3G08910

Predicted

Affinity Capture-MS

FSW = 0.0519

Unknown

DNAJ HEAT SHOCK PROTEIN PUTATIVE
AT3G18630

Predicted

biochemical

FSW = 0.0208

Unknown

URACIL DNA GLYCOSYLASE FAMILY PROTEIN
AT3G24495

Predicted

biochemical

FSW = 0.0299

Unknown

MSH7 (MUTS HOMOLOG 7) ATP BINDING / DAMAGED DNA BINDING / MISMATCHED DNA BINDING
AT3G49880

Predicted

Affinity Capture-MS

FSW = 0.0252

Unknown

GLYCOSYL HYDROLASE FAMILY PROTEIN 43
AT3G59790

Predicted

biochemical

FSW = 0.0195

Unknown

ATMPK10 MAP KINASE/ KINASE
AT4G20330

Predicted

Phenotypic Enhancement

FSW = 0.0145

Unknown

TRANSCRIPTION INITIATION FACTOR-RELATED
AT4G30000

Predicted

Affinity Capture-MS

FSW = 0.0473

Unknown

DIHYDROPTERIN PYROPHOSPHOKINASE PUTATIVE / DIHYDROPTEROATE SYNTHASE PUTATIVE / DHPS PUTATIVE
AT4G32530

Predicted

biochemical

FSW = 0.0158

Unknown

VACUOLAR ATP SYNTHASE PUTATIVE / V-ATPASE PUTATIVE
AT4G32840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0840

Unknown

PFK6 (PHOSPHOFRUCTOKINASE 6) 6-PHOSPHOFRUCTOKINASE
AT4G35620

Predicted

biochemical

FSW = 0.0120

Unknown

CYCB22 (CYCLIN B22) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G06140

Predicted

biochemical

FSW = 0.0102

Unknown

SNX1 (SORTING NEXIN 1) PHOSPHOINOSITIDE BINDING / PROTEIN BINDING
AT5G06620

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1786

Unknown

SDG38 (SET DOMAIN PROTEIN 38)
AT5G19360

Predicted

two hybrid

FSW = 0.0111

Unknown

CPK34 ATP BINDING / CALCIUM ION BINDING / CALMODULIN-DEPENDENT PROTEIN KINASE/ KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT5G24410

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0985

Unknown

GLUCOSAMINE/GALACTOSAMINE-6-PHOSPHATE ISOMERASE-RELATED
AT5G26667

Predicted

interologs mapping

Enriched domain pair

Gene neighbors method

Phylogenetic profile method

FSW = 0.0447

Unknown

PYR6 CYTIDYLATE KINASE/ URIDYLATE KINASE
AT5G41880

Predicted

biochemical

FSW = 0.0065

Unknown

POLA3 DNA PRIMASE
AT5G56510

Predicted

Affinity Capture-MS

FSW = 0.0747

Unknown

APUM12 (ARABIDOPSIS PUMILIO 12) RNA BINDING / BINDING
AT5G59440

Predicted

Synthetic Rescue

FSW = 0.0311

Unknown

ZEU1 (ZEUS1) ATP BINDING / THYMIDYLATE KINASE
AT1G09300

Predicted

Affinity Capture-MS

FSW = 0.0184

Unknown

METALLOPEPTIDASE M24 FAMILY PROTEIN
AT1G11930

Predicted

Affinity Capture-MS

FSW = 0.0248

Unknown

ALANINE RACEMASE FAMILY PROTEIN
AT1G26320

Predicted

Synthetic Lethality

FSW = 0.0110

Unknown

NADP-DEPENDENT OXIDOREDUCTASE PUTATIVE
AT2G32600

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0048

Unknown

HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN
AT3G27110

Predicted

Affinity Capture-MS

FSW = 0.0288

Unknown

PEPTIDASE M48 FAMILY PROTEIN
AT4G08500

Predicted

biochemical

FSW = 0.0075

Unknown

MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING
AT4G22756

Predicted

Affinity Capture-MS

FSW = 0.1254

Unknown

SMO1-2 (STEROL C4-METHYL OXIDASE 1-2) 44-DIMETHYL-9BETA19-CYCLOPROPYLSTEROL-4ALPHA-METHYL OXIDASE/ C-4 METHYLSTEROL OXIDASE/ CATALYTIC
AT5G50870

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.0148

Unknown

UBC27 (UBIQUITIN-CONJUGATING ENZYME 27) UBIQUITIN-PROTEIN LIGASE
AT5G59890

Predicted

two hybrid

FSW = 0.0022

Unknown

ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) ACTIN BINDING
AT5G61580

Predicted

Affinity Capture-MS

FSW = 0.0972

Unknown

PFK4 (PHOSPHOFRUCTOKINASE 4) 6-PHOSPHOFRUCTOKINASE
AT3G19420

Predicted

interaction prediction

FSW = 0.0121

Unknown

ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) PHOSPHATASE/ PROTEIN TYROSINE PHOSPHATASE

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Fasta sequences:

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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454