Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G63670 - ( SPT42 (SPT4 HOMOLOG 2) positive transcription elongation factor/ zinc ion binding )

66 Proteins interacs with AT5G63670
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G59690Predicted

interologs mapping

Phenotypic Enhancement

FSW = 0.1382

Unknown

HISTONE H4
AT1G73820

Predicted

Synthetic Rescue

FSW = 0.1482

Unknown

SSU72-LIKE FAMILY PROTEIN
AT4G35800

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

synthetic growth defect

FSW = 0.2447

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G52640

Predicted

Synthetic Lethality

synthetic growth defect

FSW = 0.0393

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT2G18040

Predicted

Phenotypic Enhancement

FSW = 0.1088

Unknown

PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT4G26720

Predicted

Affinity Capture-MS

FSW = 0.0886

Unknown

PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE
AT5G41580

Predicted

Phenotypic Enhancement

FSW = 0.0616

Unknown

ZINC ION BINDING
AT3G12810

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1543

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT3G44530

Predicted

Affinity Capture-Western

Phenotypic Enhancement

Synthetic Lethality

interologs mapping

interaction prediction

FSW = 0.2043

Unknown

HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING
AT3G13445

Predicted

Affinity Capture-MS

FSW = 0.0423

Unknown

TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING
AT3G16980

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2114

Unknown

NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING
AT2G43810

Predicted

Phenotypic Enhancement

FSW = 0.1063

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE
AT1G18040

Predicted

synthetic growth defect

FSW = 0.0900

Unknown

CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE
AT1G19120

Predicted

Phenotypic Enhancement

FSW = 0.0752

Unknown

SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE
AT4G10710

Predicted

Affinity Capture-MS

FSW = 0.2475

Unknown

SPT16 (GLOBAL TRANSCRIPTION FACTOR C)
AT1G65440

Predicted

Affinity Capture-MS

Synthetic Lethality

FSW = 0.2220

Unknown

GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR
AT2G15430

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2599

Unknown

NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION
AT2G36740

Predicted

Synthetic Lethality

FSW = 0.2613

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G37470

Predicted

interologs mapping

FSW = 0.0743

Unknown

HISTONE H2B PUTATIVE
AT2G38560

Predicted

Phenotypic Enhancement

Phenotypic Enhancement

Phenotypic Enhancement

synthetic growth defect

FSW = 0.3682

Unknown

TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR
AT4G08350

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Synthetic Lethality

FSW = 0.3634

Unknown

GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR
AT2G18760

Predicted

Synthetic Rescue

FSW = 0.0449

Unknown

CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT2G44950

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1286

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT1G75510

Predicted

Affinity Capture-MS

FSW = 0.2449

Unknown

TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN
AT5G08380

Predicted

two hybrid

FSW = 0.0080

Unknown

ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS
AT5G59180

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.2251

Unknown

NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING
AT3G52090

Predicted

Affinity Capture-MS

FSW = 0.2016

Unknown

NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G28730

Predicted

Affinity Capture-MS

FSW = 0.1466

Unknown

ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR
AT5G19910

Predicted

Phenotypic Suppression

FSW = 0.2072

Unknown

SOH1 FAMILY PROTEIN
AT4G21710

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.2411

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G05210

Predicted

interaction prediction

interologs mapping

FSW = 0.0139

Unknown

ERCC1 5-FLAP ENDONUCLEASE
AT1G08880

Predicted

Phenotypic Suppression

FSW = 0.0849

Unknown

H2AXA DNA BINDING
AT1G32130

Predicted

Affinity Capture-MS

Synthetic Lethality

FSW = 0.3064

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK)
AT1G51710

Predicted

Phenotypic Suppression

FSW = 0.1463

Unknown

UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE
AT2G43790

Predicted

Affinity Capture-Western

FSW = 0.0402

Unknown

ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE
AT3G09100

Predicted

Synthetic Lethality

FSW = 0.0757

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G20650

Predicted

Affinity Capture-MS

FSW = 0.0406

Unknown

MRNA CAPPING ENZYME FAMILY PROTEIN
AT3G21060

Predicted

Phenotypic Enhancement

Synthetic Lethality

FSW = 0.1749

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G54380

Predicted

Phenotypic Enhancement

FSW = 0.1122

Unknown

SAC3/GANP FAMILY PROTEIN
AT5G10270

Predicted

synthetic growth defect

FSW = 0.2690

Unknown

CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE
AT5G10400Predicted

interologs mapping

FSW = 0.1803

Unknown

HISTONE H3
AT5G41700

Predicted

Phenotypic Suppression

FSW = 0.0356

Unknown

UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE
AT5G51940

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1482

Unknown

NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G63610

Predicted

synthetic growth defect

FSW = 0.1109

Unknown

CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G24290

Predicted

Phenotypic Enhancement

FSW = 0.0220

Unknown

AAA-TYPE ATPASE FAMILY PROTEIN
AT1G29940Predicted

Affinity Capture-MS

FSW = 0.0401

Unknown

NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING
AT1G52740

Predicted

Phenotypic Enhancement

FSW = 0.2669

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT1G61040

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.2795

Unknown

VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING
AT1G66740

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.1359

Unknown

SGA2
AT1G79730

Predicted

Synthetic Lethality

FSW = 0.2745

Unknown

ELF7 (EARLY FLOWERING 7)
AT2G02760

Predicted

Synthetic Lethality

Synthetic Lethality

FSW = 0.1257

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT2G23070

Predicted

Phenotypic Suppression

FSW = 0.1101

Unknown

CASEIN KINASE II ALPHA CHAIN PUTATIVE
AT3G06670

Predicted

Affinity Capture-MS

two hybrid

Affinity Capture-MS

FSW = 0.1181

Unknown

BINDING
AT3G22320

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1407

Unknown

NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT3G22590

Predicted

Phenotypic Enhancement

FSW = 0.2597

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT4G02460

Predicted

Phenotypic Suppression

FSW = 0.0392

Unknown

PMS1 (POSTMEIOTIC SEGREGATION 1) ATP BINDING / MISMATCHED DNA BINDING
AT4G09140

Predicted

Phenotypic Enhancement

FSW = 0.0196

Unknown

MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING
AT4G23920

Predicted

Synthetic Rescue

FSW = 0.0392

Unknown

UGE2 (UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 2) UDP-GLUCOSE 4-EPIMERASE/ PROTEIN DIMERIZATION
AT5G10390Predicted

Phenotypic Enhancement

FSW = 0.1694

Unknown

HISTONE H3
AT5G46030

Predicted

Synthetic Lethality

Phenotypic Enhancement

FSW = 0.2584

Unknown

UNKNOWN PROTEIN
AT5G57160

Predicted

Phenotypic Enhancement

FSW = 0.0143

Unknown

ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING
AT5G58003

Predicted

synthetic growth defect

FSW = 0.3344

Unknown

CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE
AT5G58410

Predicted

Phenotypic Enhancement

FSW = 0.2804

Unknown

BINDING / PROTEIN BINDING / ZINC ION BINDING
AT5G61150

Predicted

Phenotypic Enhancement

FSW = 0.2470

Unknown

VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING
AT5G65180

Predicted

Phenotypic Enhancement

FSW = 0.1432

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK)
AT5G08565

Predicted

Gene fusion method

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.4214

Unknown

POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454