Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G63670 - ( SPT42 (SPT4 HOMOLOG 2) positive transcription elongation factor/ zinc ion binding )
66 Proteins interacs with AT5G63670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G59690 | Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1382
| Unknown | HISTONE H4 |
AT1G73820 | PredictedSynthetic Rescue | FSW = 0.1482
| Unknown | SSU72-LIKE FAMILY PROTEIN |
AT4G35800 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSsynthetic growth defect | FSW = 0.2447
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G52640 | PredictedSynthetic Lethalitysynthetic growth defect | FSW = 0.0393
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT2G18040 | PredictedPhenotypic Enhancement | FSW = 0.1088
| Unknown | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE NIMA-INTERACTING 1) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT4G26720 | PredictedAffinity Capture-MS | FSW = 0.0886
| Unknown | PPX1 (PROTEIN PHOSPHATASE X 1) PROTEIN SERINE/THREONINE PHOSPHATASE |
AT5G41580 | PredictedPhenotypic Enhancement | FSW = 0.0616
| Unknown | ZINC ION BINDING |
AT3G12810 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1543
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT3G44530 | PredictedAffinity Capture-WesternPhenotypic EnhancementSynthetic Lethalityinterologs mappinginteraction prediction | FSW = 0.2043
| Unknown | HIRA (ARABIDOPSIS HOMOLOG OF HISTONE CHAPERONE HIRA) NUCLEOTIDE BINDING / PROTEIN BINDING |
AT3G13445 | PredictedAffinity Capture-MS | FSW = 0.0423
| Unknown | TBP1 (TATA BINDING PROTEIN 1) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION FACTOR/ BINDING |
AT3G16980 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2114
| Unknown | NRPB9A DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ NUCLEIC ACID BINDING / TRANSCRIPTION REGULATOR/ ZINC ION BINDING |
AT2G43810 | PredictedPhenotypic Enhancement | FSW = 0.1063
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN F PUTATIVE / U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN PUTATIVE / SM PROTEIN F PUTATIVE |
AT1G18040 | Predictedsynthetic growth defect | FSW = 0.0900
| Unknown | CDKD13 (CYCLIN-DEPENDENT KINASE D13) KINASE/ PROTEIN KINASE |
AT1G19120 | PredictedPhenotypic Enhancement | FSW = 0.0752
| Unknown | SMALL NUCLEAR RIBONUCLEOPROTEIN PUTATIVE / SNRNP PUTATIVE / SM PROTEIN PUTATIVE |
AT4G10710 | PredictedAffinity Capture-MS | FSW = 0.2475
| Unknown | SPT16 (GLOBAL TRANSCRIPTION FACTOR C) |
AT1G65440 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.2220
| Unknown | GTB1 RNA BINDING / HYDROLASE ACTING ON ESTER BONDS / TRANSCRIPTION ELONGATION REGULATOR |
AT2G15430 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.2599
| Unknown | NRPB3 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ PROTEIN DIMERIZATION |
AT2G36740 | PredictedSynthetic Lethality | FSW = 0.2613
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G37470 | Predictedinterologs mapping | FSW = 0.0743
| Unknown | HISTONE H2B PUTATIVE |
AT2G38560 | PredictedPhenotypic EnhancementPhenotypic EnhancementPhenotypic Enhancementsynthetic growth defect | FSW = 0.3682
| Unknown | TFIIS (TRANSCRIPT ELONGATION FACTOR IIS) DNA BINDING / RNA POLYMERASE II TRANSCRIPTION ELONGATION FACTOR/ TRANSCRIPTION FACTOR |
AT4G08350 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-WesternAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSSynthetic Lethality | FSW = 0.3634
| Unknown | GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) STRUCTURAL CONSTITUENT OF RIBOSOME / TRANSCRIPTION ELONGATION REGULATOR/ TRANSCRIPTION FACTOR |
AT2G18760 | PredictedSynthetic Rescue | FSW = 0.0449
| Unknown | CHR8 (CHROMATIN REMODELING 8) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT2G44950 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1286
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G75510 | PredictedAffinity Capture-MS | FSW = 0.2449
| Unknown | TRANSCRIPTION INITIATION FACTOR IIF BETA SUBUNIT (TFIIF-BETA) FAMILY PROTEIN |
AT5G08380 | Predictedtwo hybrid | FSW = 0.0080
| Unknown | ATAGAL1 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 1) ALPHA-GALACTOSIDASE/ CATALYTIC/ HYDROLASE HYDROLYZING O-GLYCOSYL COMPOUNDS |
AT5G59180 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2251
| Unknown | NRPB7 DNA-DIRECTED RNA POLYMERASE/ RNA BINDING |
AT3G52090 | PredictedAffinity Capture-MS | FSW = 0.2016
| Unknown | NRPB11 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G28730 | PredictedAffinity Capture-MS | FSW = 0.1466
| Unknown | ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) TRANSCRIPTION FACTOR |
AT5G19910 | PredictedPhenotypic Suppression | FSW = 0.2072
| Unknown | SOH1 FAMILY PROTEIN |
AT4G21710 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.2411
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G05210 | Predictedinteraction predictioninterologs mapping | FSW = 0.0139
| Unknown | ERCC1 5-FLAP ENDONUCLEASE |
AT1G08880 | PredictedPhenotypic Suppression | FSW = 0.0849
| Unknown | H2AXA DNA BINDING |
AT1G32130 | PredictedAffinity Capture-MSSynthetic Lethality | FSW = 0.3064
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S TFIIS N-TERMINAL (INTERPROIPR017923) IWS1 C-TERMINAL (INTERPROIPR008654) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS IWS1 C-TERMINUS FAMILY PROTEIN (TAIRAT4G190001) HAS 907 BLAST HITS TO 871 PROTEINS IN 182 SPECIES ARCHAE - 4 BACTERIA - 14 METAZOA - 417 FUNGI - 195 PLANTS - 42 VIRUSES - 8 OTHER EUKARYOTES - 227 (SOURCE NCBI BLINK) |
AT1G51710 | PredictedPhenotypic Suppression | FSW = 0.1463
| Unknown | UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) CALMODULIN BINDING / UBIQUITIN-SPECIFIC PROTEASE |
AT2G43790 | PredictedAffinity Capture-Western | FSW = 0.0402
| Unknown | ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6) MAP KINASE/ KINASE |
AT3G09100 | PredictedSynthetic Lethality | FSW = 0.0757
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G20650 | PredictedAffinity Capture-MS | FSW = 0.0406
| Unknown | MRNA CAPPING ENZYME FAMILY PROTEIN |
AT3G21060 | PredictedPhenotypic EnhancementSynthetic Lethality | FSW = 0.1749
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.1122
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT5G10270 | Predictedsynthetic growth defect | FSW = 0.2690
| Unknown | CDKC1 (CYCLIN-DEPENDENT KINASE C1) KINASE |
AT5G10400 | Predictedinterologs mapping | FSW = 0.1803
| Unknown | HISTONE H3 |
AT5G41700 | PredictedPhenotypic Suppression | FSW = 0.0356
| Unknown | UBC8 (UBIQUITIN CONJUGATING ENZYME 8) PROTEIN BINDING / UBIQUITIN-PROTEIN LIGASE |
AT5G51940 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1482
| Unknown | NRPB6A DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G63610 | Predictedsynthetic growth defect | FSW = 0.1109
| Unknown | CDKE1 (CYCLIN-DEPENDENT KINASE E1) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G24290 | PredictedPhenotypic Enhancement | FSW = 0.0220
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G29940 | PredictedAffinity Capture-MS | FSW = 0.0401
| Unknown | NRPA2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ RIBONUCLEOSIDE BINDING |
AT1G52740 | PredictedPhenotypic Enhancement | FSW = 0.2669
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT1G61040 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.2795
| Unknown | VIP5 (VERNALIZATION INDEPENDENCE 5) DNA BINDING |
AT1G66740 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.1359
| Unknown | SGA2 |
AT1G79730 | PredictedSynthetic Lethality | FSW = 0.2745
| Unknown | ELF7 (EARLY FLOWERING 7) |
AT2G02760 | PredictedSynthetic LethalitySynthetic Lethality | FSW = 0.1257
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT2G23070 | PredictedPhenotypic Suppression | FSW = 0.1101
| Unknown | CASEIN KINASE II ALPHA CHAIN PUTATIVE |
AT3G06670 | PredictedAffinity Capture-MStwo hybridAffinity Capture-MS | FSW = 0.1181
| Unknown | BINDING |
AT3G22320 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.1407
| Unknown | NRPB5 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT3G22590 | PredictedPhenotypic Enhancement | FSW = 0.2597
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT4G02460 | PredictedPhenotypic Suppression | FSW = 0.0392
| Unknown | PMS1 (POSTMEIOTIC SEGREGATION 1) ATP BINDING / MISMATCHED DNA BINDING |
AT4G09140 | PredictedPhenotypic Enhancement | FSW = 0.0196
| Unknown | MLH1 (MUTL-HOMOLOGUE 1) PROTEIN BINDING BRIDGING |
AT4G23920 | PredictedSynthetic Rescue | FSW = 0.0392
| Unknown | UGE2 (UDP-D-GLUCOSE/UDP-D-GALACTOSE 4-EPIMERASE 2) UDP-GLUCOSE 4-EPIMERASE/ PROTEIN DIMERIZATION |
AT5G10390 | PredictedPhenotypic Enhancement | FSW = 0.1694
| Unknown | HISTONE H3 |
AT5G46030 | PredictedSynthetic LethalityPhenotypic Enhancement | FSW = 0.2584
| Unknown | UNKNOWN PROTEIN |
AT5G57160 | PredictedPhenotypic Enhancement | FSW = 0.0143
| Unknown | ATLIG4 DNA LIGASE (ATP)/ PROTEIN BINDING |
AT5G58003 | Predictedsynthetic growth defect | FSW = 0.3344
| Unknown | CPL4 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 4) PHOSPHOPROTEIN PHOSPHATASE |
AT5G58410 | PredictedPhenotypic Enhancement | FSW = 0.2804
| Unknown | BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT5G61150 | PredictedPhenotypic Enhancement | FSW = 0.2470
| Unknown | VIP4 (VERNALIZATION INDEPENDENCE 4) PROTEIN BINDING |
AT5G65180 | PredictedPhenotypic Enhancement | FSW = 0.1432
| Unknown | FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN EXPRESSED IN 18 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S PROTEIN OF UNKNOWN FUNCTION DUF618 (INTERPROIPR006903) REGULATION OF NUCLEAR PRE-MRNA PROTEIN (INTERPROIPR006569) ENTH/VHS (INTERPROIPR008942) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS UNKNOWN PROTEIN (TAIRAT5G100601) HAS 3523 BLAST HITS TO 3241 PROTEINS IN 333 SPECIES ARCHAE - 25 BACTERIA - 251 METAZOA - 1575 FUNGI - 421 PLANTS - 142 VIRUSES - 17 OTHER EUKARYOTES - 1092 (SOURCE NCBI BLINK) |
AT5G08565 | PredictedGene fusion methodGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.4214
| Unknown | POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454