Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G63740 - ( zinc finger protein-related )

12 Proteins interacs with AT5G63740
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G05520

Predicted

two hybrid

FSW = 0.0970

Unknown

OUTER MEMBRANE OMP85 FAMILY PROTEIN
AT2G34480

Predicted

two hybrid

FSW = 0.0115

Unknown

60S RIBOSOMAL PROTEIN L18A (RPL18AB)
AT3G29100

Predicted

two hybrid

FSW = 0.0711

Unknown

VTI13 SNARE BINDING / RECEPTOR
AT2G45130

Predicted

two hybrid

FSW = 0.0485

Unknown

SPX3 (SPX DOMAIN GENE 3)
AT1G75370

Predicted

two hybrid

FSW = 0.0889

Unknown

SEC14 CYTOSOLIC FACTOR PUTATIVE / PHOSPHATIDYLINOSITOL TRANSFER-LIKE PROTEIN PUTATIVE
AT3G16780

Predicted

two hybrid

FSW = 0.0627

Unknown

60S RIBOSOMAL PROTEIN L19 (RPL19B)
AT1G11800

Predicted

two hybrid

FSW = 0.0533

Unknown

ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN
AT1G01560

Predicted

two hybrid

FSW = 0.0889

Unknown

ATMPK11 MAP KINASE/ KINASE
AT1G34580

Predicted

two hybrid

FSW = 0.0044

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT4G16440

Predicted

two hybrid

FSW = 0.0533

Unknown

FERREDOXIN HYDROGENASE
AT4G25850

Predicted

two hybrid

FSW = 0.0970

Unknown

ORP4B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 4B) OXYSTEROL BINDING
AT5G19820

Predicted

two hybrid

FSW = 0.0051

Unknown

EMB2734 (EMBRYO DEFECTIVE 2734) BINDING / LYASE

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454