Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G63840 - ( RSW3 (RADIAL SWELLING 3) glucosidase/ hydrolase hydrolyzing O-glycosyl compounds )
41 Proteins interacs with AT5G63840| Locus | Method | FSW  | Cellular Compartment Classification (C3) | Description |
|---|---|---|---|---|
AT5G61790
   | PredictedPhenotypic Enhancement | FSW = 0.1985
| Class C:plastidendoplasmic reticulum | CALNEXIN 1 (CNX1) |
| AT2G01720
| PredictedPhenotypic Enhancement | FSW = 0.0909
| Class C:plastidendoplasmic reticulum | RIBOPHORIN I FAMILY PROTEIN |
| AT1G77510
| PredictedPhenotypic Enhancement | FSW = 0.0938
| Class C:plastidendoplasmic reticulum | ATPDIL1-2 (PDI-LIKE 1-2) PROTEIN DISULFIDE ISOMERASE |
| AT5G60640
| Predictedinterologs mappingCo-expression | FSW = 0.0519
| Class C:plastidendoplasmic reticulum | ATPDIL1-4 (PDI-LIKE 1-4) PROTEIN DISULFIDE ISOMERASE |
| AT3G25520
| Predictedtwo hybrid | FSW = 0.0154
| Class C:plastid | ATL5 (A THALIANA RIBOSOMAL PROTEIN L5) 5S RRNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME |
| AT2G33210
| Predictedpull down | FSW = 0.0020
| Class C:plastid | HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING |
| AT5G15700
| PredictedSynthetic Lethality | FSW = 0.0667
| Class C:plastid | DNA-DIRECTED RNA POLYMERASE (RPOT2) |
| AT2G24120
| Predictedinteraction prediction | FSW = 0.0455
| Class C:plastid | SCA3 (SCABRA 3) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
| AT5G66680
| Predictedinterologs mappingPhenotypic EnhancementCo-expression | FSW = 0.2041
| Class C:endoplasmic reticulum | DGL1 DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE-PROTEIN GLYCOTRANSFERASE |
| AT1G79940
| Predictedinterologs mapping | FSW = 0.1652
| Class C:endoplasmic reticulum | ATERDJ2A HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
| AT1G09210
| Predictedinterologs mapping | FSW = 0.1896
| Class C:endoplasmic reticulum | CALRETICULIN 2 (CRT2) |
| AT5G23630
| Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.2333
| Class C:endoplasmic reticulum | ATPASE E1-E2 TYPE FAMILY PROTEIN / HALOACID DEHALOGENASE-LIKE HYDROLASE FAMILIY PROTEIN |
| AT1G07670
| PredictedPhenotypic Enhancement | FSW = 0.0605
| Class C:endoplasmic reticulum | CALCIUM-TRANSPORTING ATPASE |
| AT4G21180
| PredictedPhenotypic Enhancement | FSW = 0.1081
| Class C:endoplasmic reticulum | ATERDJ2B HEAT SHOCK PROTEIN BINDING / UNFOLDED PROTEIN BINDING |
| AT2G17520
| Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.1681
| Class C:endoplasmic reticulum | IRE1A ENDORIBONUCLEASE/ KINASE |
| AT1G10130
| Predictedinterologs mapping | FSW = 0.0522
| Class C:endoplasmic reticulum | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3) CALCIUM-TRANSPORTING ATPASE/ CALMODULIN BINDING / MANGANESE-TRANSPORTING ATPASE/ PEROXIDASE |
| AT1G22200
| PredictedAffinity Capture-Western | FSW = 0.1000
| Class C:endoplasmic reticulum | UNKNOWN PROTEIN |
| AT1G76400
| Predictedinterologs mappingCo-expression | FSW = 0.0373
| Class C:endoplasmic reticulum | RIBOPHORIN I FAMILY PROTEIN |
| AT5G50850
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.0190
| Unknown | MAB1 (MACCI-BOU) CATALYTIC/ PYRUVATE DEHYDROGENASE (ACETYL-TRANSFERRING) |
| AT2G30710
| PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1902
| Unknown | RABGAP/TBC DOMAIN-CONTAINING PROTEIN |
| AT5G39740
| Predictedtwo hybridtwo hybrid | FSW = 0.0081
| Unknown | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
| AT5G52640
| Predictedsynthetic growth defect | FSW = 0.0242
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
| AT3G43810
| PredictedReconstituted Complexinteraction prediction | FSW = 0.0063
| Unknown | CAM7 (CALMODULIN 7) CALCIUM ION BINDING |
| AT1G66410
| PredictedReconstituted Complex | FSW = 0.0041
| Unknown | CAM4 (CALMODULIN 4) CALCIUM ION BINDING / SIGNAL TRANSDUCER |
| AT4G32760
| PredictedSynthetic Lethality | FSW = 0.0381
| Unknown | PROTEIN TRANSPORTER |
| AT1G68990
| PredictedSynthetic Lethality | FSW = 0.0519
| Unknown | DNA-DIRECTED RNA POLYMERASE MITOCHONDRIAL (RPOMT) |
| AT5G56360
| PredictedAffinity Capture-MSin vitroAffinity Capture-MSAffinity Capture-Westernco-fractionationCo-fractionation | FSW = 0.0773
| Unknown | CALMODULIN-BINDING PROTEIN |
| AT1G26450
| Predictedinteraction predictionSynthetic LethalitySynthetic LethalityPhenotypic Enhancement | FSW = 0.1902
| Unknown | BETA-13-GLUCANASE-RELATED |
| AT1G57600
| PredictedSynthetic Lethalityinterologs mappingPhenotypic Enhancementinteraction prediction | FSW = 0.2051
| Unknown | MEMBRANE BOUND O-ACYL TRANSFERASE (MBOAT) FAMILY PROTEIN |
| AT1G79990
| PredictedPhenotypic Enhancement | FSW = 0.0683
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
| AT2G34770
| Predictedinterologs mappingPhenotypic Suppression | FSW = 0.1400
| Unknown | FAH1 (FATTY ACID HYDROXYLASE 1) CATALYTIC/ FATTY ACID ALPHA-HYDROXYLASE |
| AT4G08500
| PredictedSynthetic Lethality | FSW = 0.0423
| Unknown | MEKK1 (MAP KINASE KINASE KINASE 1) DNA BINDING / MAP KINASE KINASE KINASE/ KINASE/ KINASE BINDING / PROTEIN BINDING |
| AT1G16560
| Predictedinterologs mappingPhenotypic Enhancement | FSW = 0.3484
| Unknown | PER1-LIKE FAMILY PROTEIN |
| AT1G50030
| PredictedSynthetic Rescueinteraction prediction | FSW = 0.0394
| Unknown | TOR (TARGET OF RAPAMYCIN) 1-PHOSPHATIDYLINOSITOL-3-KINASE/ PROTEIN BINDING |
| AT2G01170
| Predictedtwo hybridinteraction prediction | FSW = 0.0519
| Unknown | BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1) AMINO ACID TRANSMEMBRANE TRANSPORTER |
| AT2G22530
| PredictedPhenotypic Enhancement | FSW = 0.2222
| Unknown | CATALYTIC/ TRANSFERASE |
| AT1G09460
| PredictedSynthetic LethalitySynthetic Lethalityinterologs mapping | FSW = 0.1546
| Unknown | GLUCAN ENDO-13-BETA-GLUCOSIDASE-RELATED |
| AT1G52360
| Predictedinterologs mapping | FSW = 0.0269
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
| AT1G09080
| PredictedPhenotypic Enhancement | FSW = 0.1053
| Unknown | BIP3 ATP BINDING |
| AT1G09000
| PredictedSynthetic Lethality | FSW = 0.0296
| Unknown | ANP1 (ARABIDOPSIS NPK1-RELATED PROTEIN KINASE 1) MAP KINASE KINASE KINASE/ KINASE |
| AT1G54960
| Predictedinteraction prediction | FSW = 0.0500
| Unknown | ANP2 MAP KINASE KINASE KINASE/ KINASE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
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