Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G63880 - ( VPS201 )
32 Proteins interacs with AT5G63880Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G09630 | Predictedtwo hybridtwo hybrid | FSW = 0.0086
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L4/L1 (RPL4A) |
AT5G09260 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.5357
| Class C:plasma membrane | VPS202 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 202) |
AT2G19830 | PredictedAffinity Capture-WesternAffinity Capture-Westerntwo hybrid | FSW = 0.1420
| Class C:plasma membrane | SNF72 |
AT2G44950 | Predictedsynthetic growth defect | FSW = 0.0477
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT1G53570 | Predictedtwo hybrid | FSW = 0.0199
| Unknown | MAP3KA ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT2G43190 | Predictedtwo hybridtwo hybrid | FSW = 0.0076
| Unknown | RIBONUCLEASE P FAMILY PROTEIN |
AT5G05970 | Predictedtwo hybrid | FSW = 0.1111
| Unknown | NEDD1 (NEURAL PRECURSOR CELL EXPRESSED DEVELOPMENTALLY DOWN-REGULATED GENE 1) NUCLEOTIDE BINDING |
AT5G20030 | Predictedtwo hybrid | FSW = 0.0416
| Unknown | AGENET DOMAIN-CONTAINING PROTEIN |
AT3G60580 | Predictedtwo hybrid | FSW = 0.0914
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT4G19003 | Predictedtwo hybridtwo hybridtwo hybridtwo hybridReconstituted Complexinteraction prediction | FSW = 0.3271
| Unknown | VPS25 |
AT4G20325 | Predictedtwo hybrid | FSW = 0.0117
| Unknown | UNKNOWN PROTEIN |
AT1G60420 | PredictedAffinity Capture-MS | FSW = 0.0914
| Unknown | DC1 DOMAIN-CONTAINING PROTEIN |
AT4G31240 | PredictedAffinity Capture-MS | FSW = 0.0653
| Unknown | INVOLVED IN CELL REDOX HOMEOSTASIS LOCATED IN CELLULAR_COMPONENT UNKNOWN EXPRESSED IN 21 PLANT STRUCTURES EXPRESSED DURING 9 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S THIOREDOXIN FOLD (INTERPROIPR012335) THIOREDOXIN-LIKE (INTERPROIPR017936) THIOREDOXIN-LIKE FOLD (INTERPROIPR012336) C1-LIKE (INTERPROIPR011424) BEST ARABIDOPSIS THALIANA PROTEIN MATCH IS DC1 DOMAIN-CONTAINING PROTEIN (TAIRAT1G604201) HAS 1190 BLAST HITS TO 724 PROTEINS IN 157 SPECIES ARCHAE - 0 BACTERIA - 225 METAZOA - 381 FUNGI - 0 PLANTS - 174 VIRUSES - 0 OTHER EUKARYOTES - 410 (SOURCE NCBI BLINK) |
AT2G27600 | PredictedReconstituted Complextwo hybridReconstituted ComplexReconstituted Complextwo hybridinteraction prediction | FSW = 0.0754
| Unknown | SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1) ATP BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT4G21560 | PredictedAffinity Capture-Westerntwo hybridAffinity Capture-Western | FSW = 0.1144
| Unknown | VPS28-1 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 28 HOMOLOG 1) TRANSPORTER |
AT4G27040 | Predictedtwo hybridAffinity Capture-Western | FSW = 0.4817
| Unknown | VPS22 |
AT5G22950 | PredictedAffinity Capture-WesternAffinity Capture-Western | FSW = 0.2230
| Unknown | VPS241 |
AT1G04730 | PredictedSynthetic Lethality | FSW = 0.1165
| Unknown | AAA-TYPE ATPASE FAMILY PROTEIN |
AT1G67190 | Predictedsynthetic growth defect | FSW = 0.1400
| Unknown | F-BOX FAMILY PROTEIN |
AT1G80410 | Predictedsynthetic growth defect | FSW = 0.0953
| Unknown | EMB2753 (EMBRYO DEFECTIVE 2753) BINDING |
AT2G44580 | Predictedsynthetic growth defect | FSW = 0.1245
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G58560 | Predictedsynthetic growth defect | FSW = 0.1105
| Unknown | ENDONUCLEASE/EXONUCLEASE/PHOSPHATASE FAMILY PROTEIN |
AT4G25120 | Predictedsynthetic growth defect | FSW = 0.0567
| Unknown | ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING / HYDROLASE |
AT4G38630 | Predictedsynthetic growth defect | FSW = 0.0514
| Unknown | RPN10 (REGULATORY PARTICLE NON-ATPASE 10) PEPTIDE RECEPTOR |
AT5G10960 | PredictedSynthetic Lethality | FSW = 0.1463
| Unknown | CCR4-NOT TRANSCRIPTION COMPLEX PROTEIN PUTATIVE |
AT5G13780 | Predictedsynthetic growth defect | FSW = 0.0878
| Unknown | GCN5-RELATED N-ACETYLTRANSFERASE PUTATIVE |
AT5G53770 | Predictedsynthetic growth defect | FSW = 0.0644
| Unknown | NUCLEOTIDYLTRANSFERASE FAMILY PROTEIN |
AT5G61470 | Predictedtwo hybrid | FSW = 0.0914
| Unknown | ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN |
AT2G32510 | Predictedtwo hybrid | FSW = 0.0508
| Unknown | MAPKKK17 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT5G62700 | Predictedtwo hybrid | FSW = 0.0134
| Unknown | TUB3 GTP BINDING / GTPASE/ STRUCTURAL MOLECULE |
AT5G04920 | Predictedinteraction prediction | FSW = 0.3765
| Unknown | VACUOLAR PROTEIN SORTING 36 FAMILY PROTEIN / VPS36 FAMILY PROTEIN |
AT4G29160 | PredictedGene fusion methodCo-expression | FSW = 0.0250
| Unknown | SNF71 |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454