Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G64070 - ( PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1) 1-phosphatidylinositol 4-kinase )

7 Proteins interacs with AT5G64070
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G39990

Experimental

two hybrid

Reconstituted Complex

FSW = 0.0400

Class A:

plasma membrane

Class B:

unclear

cytosol

Class D:

mitochondrion (p = 0.82)

 RABA4B (RAB GTPASE HOMOLOG A4B) GTP BINDING
AT4G17615

Experimental

two hybrid

FSW = 0.1667

Class A:

plasma membrane

Class B:

unclear

cytosol

 CBL1 (CALCINEURIN B-LIKE PROTEIN 1) CALCIUM ION BINDING
AT5G35750

Experimental

pull down

two hybrid

FSW = 0.0308

Unknown

 AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) CYTOKININ RECEPTOR/ OSMOSENSOR/ PROTEIN HISTIDINE KINASE
AT1G21980

Experimental

pull down

Affinity Capture-MS

Reconstituted Complex

FSW = 0.0745

Unknown

 ATPIP5K1 (PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 1) 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ACTIN FILAMENT BINDING / ACTIN MONOMER BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE
AT5G10450

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0094

Class C:

plasma membrane

cytosol

 GRF6 (G-BOX REGULATING FACTOR 6) PROTEIN BINDING / PROTEIN PHOSPHORYLATED AMINO ACID BINDING
AT5G47100

Predicted

in vitro

in vivo

in vivo

in vitro

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0445

Class C:

plasma membrane

 CBL9 CALCIUM ION BINDING
AT5G24270

Predicted

in vivo

in vivo

in vivo

in vitro

in vitro

in vitro

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.0683

Unknown

 SOS3 (SALT OVERLY SENSITIVE 3) CALCIUM ION BINDING / CALCIUM-DEPENDENT PROTEIN SERINE/THREONINE PHOSPHATASE

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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