Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G64200 - ( ATSC35 RNA binding / nucleic acid binding / nucleotide binding )
20 Proteins interacs with AT5G64200Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G55310 | ExperimentalReconstituted Complexin vitro | FSW = 0.4154
| Class A:nucleusClass B:plasma membraneClass D:nucleus (p = 0.78) | SR33 RNA BINDING / PROTEIN BINDING |
AT3G55460 | ExperimentalReconstituted Complexin vitro | FSW = 0.3333
| Class A:nucleusClass D:nucleus (p = 0.78) | SCL30 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT3G13570 | ExperimentalReconstituted Complexin vitro | FSW = 0.3684
| Class A:nucleusClass D:nucleus (p = 0.78) | SCL30A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT2G37340 | Experimentaltwo hybrid | FSW = 0.4500
| Class A:nucleusClass D:nucleus (p = 0.78) | RSZ33 NUCLEIC ACID BINDING / ZINC ION BINDING |
AT2G43370 | ExperimentalReconstituted Complex | FSW = 0.2800
| Class A:nucleusClass D:nucleus (p = 0.78) | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA PUTATIVE |
AT1G53720 | ExperimentalReconstituted Complexin vitro | FSW = 0.1524
| Unknown | CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
AT1G16610 | PredictedAffinity Capture-MS | FSW = 0.1273
| Class C:nucleus | SR45 RNA BINDING / PROTEIN BINDING |
AT3G50670 | Predictedin vitroCo-expression | FSW = 0.0395
| Class C:nucleus | U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING |
AT1G10320 | Predictedin vitrotwo hybrid | FSW = 0.0600
| Class C:nucleus | U2 SNRNP AUXILIARY FACTOR-RELATED |
AT5G50860 | Predictedin vivoin vitro | FSW = 0.0994
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT5G22000 | Predictedin vitroin vivotwo hybrid | FSW = 0.1875
| Unknown | RHF2A (RING-H2 GROUP F2A) PROTEIN BINDING / ZINC ION BINDING |
AT5G53360 | Predictedtwo hybrid | FSW = 0.0139
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
AT1G77720 | Predictedtwo hybrid | FSW = 0.0183
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
AT4G32660 | Predictedtwo hybrid | FSW = 0.0217
| Unknown | AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G30460 | Predictedin vitrotwo hybrid | FSW = 0.0258
| Unknown | CPSF30 RNA BINDING / CALMODULIN BINDING / ENDONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING |
AT1G54380 | Predictedtwo hybridin vitroCo-expression | FSW = 0.2048
| Unknown | SPLICEOSOME PROTEIN-RELATED |
AT2G26430 | Predictedtwo hybridin vitro | FSW = 0.1391
| Unknown | RCY1 (ARGININE-RICH CYCLIN 1) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR |
AT4G11970 | Predictedin vitrotwo hybrid | FSW = 0.1159
| Unknown | YT521-B-LIKE FAMILY PROTEIN |
AT5G42820 | Predictedin vivoCo-expression | FSW = 0.0896
| Unknown | U2AF35B RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING |
AT2G41980 | Predictedtwo hybrid | FSW = 0.0302
| Unknown | SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454