Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G64200 - ( ATSC35 RNA binding / nucleic acid binding / nucleotide binding )

20 Proteins interacs with AT5G64200
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G55310

Experimental

Reconstituted Complex

in vitro

FSW = 0.4154

Class A:

nucleus

Class B:

plasma membrane

Class D:

nucleus (p = 0.78)

SR33 RNA BINDING / PROTEIN BINDING
AT3G55460

Experimental

Reconstituted Complex

in vitro

FSW = 0.3333

Class A:

nucleus

Class D:

nucleus (p = 0.78)

SCL30 RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT3G13570

Experimental

Reconstituted Complex

in vitro

FSW = 0.3684

Class A:

nucleus

Class D:

nucleus (p = 0.78)

SCL30A RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT2G37340

Experimental

two hybrid

FSW = 0.4500

Class A:

nucleus

Class D:

nucleus (p = 0.78)

RSZ33 NUCLEIC ACID BINDING / ZINC ION BINDING
AT2G43370

Experimental

Reconstituted Complex

FSW = 0.2800

Class A:

nucleus

Class D:

nucleus (p = 0.78)

U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA PUTATIVE
AT1G53720

Experimental

Reconstituted Complex

in vitro

FSW = 0.1524

Unknown

CYP59 (CYCLOPHILIN 59) RNA BINDING / NUCLEIC ACID BINDING / PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
AT1G16610

Predicted

Affinity Capture-MS

FSW = 0.1273

Class C:

nucleus

SR45 RNA BINDING / PROTEIN BINDING
AT3G50670

Predicted

in vitro

Co-expression

FSW = 0.0395

Class C:

nucleus

U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING
AT1G10320

Predicted

in vitro

two hybrid

FSW = 0.0600

Class C:

nucleus

U2 SNRNP AUXILIARY FACTOR-RELATED
AT5G50860

Predicted

in vivo

in vitro

FSW = 0.0994

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT5G22000

Predicted

in vitro

in vivo

two hybrid

FSW = 0.1875

Unknown

RHF2A (RING-H2 GROUP F2A) PROTEIN BINDING / ZINC ION BINDING
AT5G53360

Predicted

two hybrid

FSW = 0.0139

Unknown

SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN
AT1G77720

Predicted

two hybrid

FSW = 0.0183

Unknown

PROTEIN KINASE FAMILY PROTEIN
AT4G32660

Predicted

two hybrid

FSW = 0.0217

Unknown

AME3 ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE
AT1G30460

Predicted

in vitro

two hybrid

FSW = 0.0258

Unknown

CPSF30 RNA BINDING / CALMODULIN BINDING / ENDONUCLEASE/ NUCLEIC ACID BINDING / PROTEIN BINDING
AT1G54380

Predicted

two hybrid

in vitro

Co-expression

FSW = 0.2048

Unknown

SPLICEOSOME PROTEIN-RELATED
AT2G26430

Predicted

two hybrid

in vitro

FSW = 0.1391

Unknown

RCY1 (ARGININE-RICH CYCLIN 1) CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT4G11970

Predicted

in vitro

two hybrid

FSW = 0.1159

Unknown

YT521-B-LIKE FAMILY PROTEIN
AT5G42820

Predicted

in vivo

Co-expression

FSW = 0.0896

Unknown

U2AF35B RNA BINDING / NUCLEIC ACID BINDING / NUCLEOTIDE BINDING / ZINC ION BINDING
AT2G41980

Predicted

two hybrid

FSW = 0.0302

Unknown

SEVEN IN ABSENTIA (SINA) FAMILY PROTEIN

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454