Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G64300 - ( ATGCH 34-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II )

9 Proteins interacs with AT5G64300
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT5G08670

Predicted

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FSW = 0.0566

Class C:

plastid

ATP BINDING / HYDROGEN ION TRANSPORTING ATP SYNTHASE ROTATIONAL MECHANISM
AT5G59750

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0482

Class C:

plastid

RIBOFLAVIN BIOSYNTHESIS PROTEIN PUTATIVE
AT3G10370

Predicted

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FSW = 0.0504

Unknown

SDP6 (SUGAR-DEPENDENT 6) GLYCEROL-3-PHOSPHATE DEHYDROGENASE
AT4G30210

Predicted

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FSW = 0.0937

Unknown

ATR2 (ARABIDOPSIS P450 REDUCTASE 2) NADPH-HEMOPROTEIN REDUCTASE
AT1G09195

Predicted

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FSW = 0.1641

Unknown

FUNCTIONS IN MOLECULAR_FUNCTION UNKNOWN INVOLVED IN BIOLOGICAL_PROCESS UNKNOWN LOCATED IN MITOCHONDRION CONTAINS INTERPRO DOMAIN/S PPX/GPPA PHOSPHATASE (INTERPROIPR003695) HAS 1514 BLAST HITS TO 1514 PROTEINS IN 543 SPECIES ARCHAE - 16 BACTERIA - 1249 METAZOA - 0 FUNGI - 0 PLANTS - 16 VIRUSES - 0 OTHER EUKARYOTES - 233 (SOURCE NCBI BLINK)
AT1G76690

Predicted

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FSW = 0.1025

Unknown

OPR2
AT2G31955

Predicted

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FSW = 0.0863

Unknown

CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2) CATALYTIC
AT4G29540

Predicted

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FSW = 0.0395

Unknown

BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN
AT1G07710

Predicted

Gene fusion method

FSW = 0.0800

Unknown

ANKYRIN REPEAT FAMILY PROTEIN

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Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454