Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G64670 - ( ribosomal protein L15 family protein )
54 Proteins interacs with AT5G64670Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G31490 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0984
| Unknown | COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE |
AT1G65540 | PredictedAffinity Capture-MS | FSW = 0.1161
| Unknown | CALCIUM-BINDING EF HAND FAMILY PROTEIN |
AT2G21280 | Predictedpull down | FSW = 0.0255
| Unknown | SULA BINDING / CATALYTIC/ COENZYME BINDING |
AT5G20720 | Predictedpull down | FSW = 0.0201
| Unknown | CPN20 (CHAPERONIN 20) CALMODULIN BINDING |
AT2G36990 | Predictedpull down | FSW = 0.1129
| Unknown | SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) DNA BINDING / DNA-DIRECTED RNA POLYMERASE/ SIGMA FACTOR/ TRANSCRIPTION FACTOR |
AT3G63490 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2794
| Unknown | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT4G30690 | Predictedpull down | FSW = 0.1125
| Unknown | TRANSLATION INITIATION FACTOR 3 (IF-3) FAMILY PROTEIN |
AT4G02260 | Predictedpull down | FSW = 0.1256
| Unknown | RSH1 (RELA-SPOT HOMOLOG 1) CATALYTIC |
AT2G19870 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0725
| Unknown | TRNA/RRNA METHYLTRANSFERASE (SPOU) FAMILY PROTEIN |
AT2G04270 | Predictedaffinity chromatography technology | FSW = 0.0967
| Unknown | RNEE/G (RNASE E/G-LIKE) ENDORIBONUCLEASE |
AT5G40950 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.2388
| Unknown | RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT3G03710 | Predictedpull down | FSW = 0.1619
| Unknown | RIF10 (RESISTANT TO INHIBITION WITH FSM 10) 3-5-EXORIBONUCLEASE/ RNA BINDING / NUCLEIC ACID BINDING / POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
AT4G01310 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3485
| Unknown | RIBOSOMAL PROTEIN L5 FAMILY PROTEIN |
AT1G78630 | PredictedAffinity Capture-MSAffinity Capture-MSpull downinteraction prediction | FSW = 0.3308
| Unknown | EMB1473 (EMBRYO DEFECTIVE 1473) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT1G05190 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.3228
| Unknown | EMB2394 (EMBRYO DEFECTIVE 2394) STRUCTURAL CONSTITUENT OF RIBOSOME |
ATCG00180 | Predictedpull down | FSW = 0.1246
| Unknown | RNA POLYMERASE BETA SUBUNIT-1 |
ATCG00740 | Predictedpull down | FSW = 0.1685
| Unknown | RNA POLYMERASE ALPHA SUBUNIT |
ATCG00810 | Predictedpull down | FSW = 0.1804
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L22 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG00830 | Predictedpull down | FSW = 0.1890
| Unknown | ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX |
ATCG00790 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.3088
| Unknown | CHLOROPLAST GENE ENCODING A RIBOSOMAL PROTEIN L16 WHICH IS A CONSTITUENT OF 50S LARGE RIBOSOMAL SUBUNIT |
AT3G11964 | PredictedAffinity Capture-MSCo-expression | FSW = 0.0055
| Unknown | RNA BINDING |
AT1G62020 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0673
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT ALPHA PUTATIVE |
AT5G57015 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.0110
| Unknown | CKL12 (CASEIN KINASE I-LIKE 12) ATP BINDING / KINASE/ PROTEIN KINASE/ PROTEIN SERINE/THREONINE KINASE |
AT1G03930 | PredictedAffinity Capture-MS | FSW = 0.0147
| Unknown | ADK1 (DUAL SPECIFICITY KINASE 1) KINASE/ PROTEIN SERINE/THREONINE/TYROSINE KINASE |
AT3G07050 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0282
| Unknown | GTP-BINDING FAMILY PROTEIN |
AT1G65290 | Predictedpull down | FSW = 0.0505
| Unknown | MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING |
AT3G17465 | PredictedAffinity Capture-MSCo-expression | FSW = 0.3734
| Unknown | RPL3P (RIBOSOMAL PROTEIN L3 PLASTID) STRUCTURAL CONSTITUENT OF RIBOSOME |
AT5G39800 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0468
| Unknown | 60S RIBOSOMAL PROTEIN-RELATED |
AT4G31460 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.3184
| Unknown | RIBOSOMAL PROTEIN L28 FAMILY PROTEIN |
AT4G30990 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0096
| Unknown | BINDING |
AT3G49080 | Predictedpull down | FSW = 0.1600
| Unknown | RIBOSOMAL PROTEIN S9 FAMILY PROTEIN |
AT2G16930 | Predictedpull down | FSW = 0.1242
| Unknown | RIBOSOMAL PROTEIN L27 FAMILY PROTEIN |
AT2G17510 | Predictedpull down | FSW = 0.1211
| Unknown | EMB2763 (EMBRYO DEFECTIVE 2763) RNA BINDING / RIBONUCLEASE |
AT3G24560 | Predictedpull down | FSW = 0.1111
| Unknown | RSY3 (RASPBERRY 3) |
AT4G04950 | Predictedpull down | FSW = 0.0247
| Unknown | THIOREDOXIN FAMILY PROTEIN |
AT4G21220 | Predictedpull down | FSW = 0.1560
| Unknown | BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN |
AT4G26780 | Predictedpull down | FSW = 0.0370
| Unknown | AR192 ADENYL-NUCLEOTIDE EXCHANGE FACTOR/ CHAPERONE BINDING / PROTEIN BINDING / PROTEIN HOMODIMERIZATION |
AT4G29540 | Predictedpull down | FSW = 0.1054
| Unknown | BACTERIAL TRANSFERASE HEXAPEPTIDE REPEAT-CONTAINING PROTEIN |
AT4G36020 | Predictedpull down | FSW = 0.0752
| Unknown | CSDP1 (COLD SHOCK DOMAIN PROTEIN 1) RNA BINDING / DOUBLE-STRANDED DNA BINDING / NUCLEIC ACID BINDING / SINGLE-STRANDED DNA BINDING |
AT5G14460 | Predictedpull down | FSW = 0.0776
| Unknown | PSEUDOURIDINE SYNTHASE/ TRANSPORTER |
AT5G51140 | Predictedpull down | FSW = 0.1685
| Unknown | PSEUDOURIDINE SYNTHASE FAMILY PROTEIN |
AT5G57190 | Predictedpull down | FSW = 0.0064
| Unknown | PSD2 (PHOSPHATIDYLSERINE DECARBOXYLASE 2) PHOSPHATIDYLSERINE DECARBOXYLASE |
ATCG01230 | Predictedpull down | FSW = 0.1242
| Unknown | CHLOROPLAST GENE ENCODING RIBOSOMAL PROTEIN S12 THE GENE IS LOCATED IN THREE DISTINCT LOCI ON THE CHLOROPLAST GENOME AND IS TRANSPLICED TO MAKE ONE TRANSCRIPT |
AT1G07830 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2549
| Unknown | RIBOSOMAL PROTEIN L29 FAMILY PROTEIN |
AT1G14620 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.2773
| Unknown | DECOY (DECOY) |
AT1G79990 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0347
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT4G30991 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0282
| Unknown | LOCATED IN ENDOMEMBRANE SYSTEM COPI VESICLE COAT GOLGI MEMBRANE EXPRESSED IN 25 PLANT STRUCTURES EXPRESSED DURING 15 GROWTH STAGES CONTAINS INTERPRO DOMAIN/S SYS1 HOMOLOGUE (INTERPROIPR016973) HAS 55556 BLAST HITS TO 24059 PROTEINS IN 620 SPECIES ARCHAE - 38 BACTERIA - 5697 METAZOA - 25539 FUNGI - 10898 PLANTS - 5309 VIRUSES - 0 OTHER EUKARYOTES - 8075 (SOURCE NCBI BLINK) |
AT5G05010 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1054
| Unknown | CLATHRIN ADAPTOR COMPLEXES MEDIUM SUBUNIT-RELATED |
AT1G54140 | PredictedSynthetic Lethality | FSW = 0.0051
| Unknown | TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) DNA BINDING / TRANSCRIPTION INITIATION FACTOR |
AT2G22400 | PredictedAffinity Capture-MSinteraction predictionCo-expression | FSW = 0.0112
| Unknown | NOL1/NOP2/SUN FAMILY PROTEIN |
AT2G42710 | PredictedAffinity Capture-MSAffinity Capture-MSCo-expression | FSW = 0.0361
| Unknown | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT2G28820 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.1270
| Unknown | RIBOSOMAL PROTEIN L1 FAMILY PROTEIN |
AT4G31480 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0930
| Unknown | COATOMER BETA SUBUNIT PUTATIVE / BETA-COAT PROTEIN PUTATIVE / BETA-COP PUTATIVE |
AT1G52360 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0295
| Unknown | COATOMER PROTEIN COMPLEX SUBUNIT BETA 2 (BETA PRIME) PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454