Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G64740 - ( CESA6 (CELLULOSE SYNTHASE 6) cellulose synthase/ transferase transferring glycosyl groups )
24 Proteins interacs with AT5G64740Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT5G05170 | Experimentalcoimmunoprecipitationsplit-reporter assayAffinity Capture-Westernprotein complementation assay | FSW = 0.1837
| Class A:plasma membranegolgicytoskeletonClass B:vacuoleClass D:plasma membrane (p = 0.25)cytosol (p = 0.67) | CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT4G32410 | Experimentalsplit-reporter assayprotein complementation assay | FSW = 0.0857
| Class A:plasma membranegolgiClass B:cytoskeletonClass D:plasma membrane (p = 0.25)cytosol (p = 0.67) | CESA1 (CELLULOSE SYNTHASE 1) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G22890 | PredictedSynthetic Lethality | FSW = 0.0611
| Class C:plasma membrane | APS1 (ATP SULFURYLASE 1) SULFATE ADENYLYLTRANSFERASE (ATP) |
AT5G39740 | Predictedtwo hybrid | FSW = 0.0060
| Class C:plasma membrane | 60S RIBOSOMAL PROTEIN L5 (RPL5B) |
AT4G39350 | PredictedGene fusion methodCo-expression | FSW = 0.0290
| Class C:plasma membrane | CESA2 (CELLULOSE SYNTHASE A2) CELLULOSE SYNTHASE/ TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT1G80050 | PredictedSynthetic Lethality | FSW = 0.0801
| Class C:plasma membrane | APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2) ADENINE PHOSPHORIBOSYLTRANSFERASE/ PHOSPHATE TRANSMEMBRANE TRANSPORTER |
AT5G63400 | PredictedPhenotypic Enhancement | FSW = 0.0269
| Unknown | ADK1 (ADENYLATE KINASE 1) ATP BINDING / ADENYLATE KINASE/ NUCLEOBASE NUCLEOSIDE NUCLEOTIDE KINASE/ NUCLEOTIDE KINASE/ PHOSPHOTRANSFERASE PHOSPHATE GROUP AS ACCEPTOR |
AT3G57990 | PredictedSynthetic Lethality | FSW = 0.1284
| Unknown | UNKNOWN PROTEIN |
AT5G57870 | Predictedin vivoin vitro | FSW = 0.0429
| Unknown | EUKARYOTIC TRANSLATION INITIATION FACTOR 4F PUTATIVE / EIF-4F PUTATIVE |
AT5G53460 | Predictedtwo hybrid | FSW = 0.0247
| Unknown | GLT1 GLUTAMATE SYNTHASE (NADH) |
AT5G51820 | PredictedSynthetic Lethality | FSW = 0.0554
| Unknown | PGM (PHOSPHOGLUCOMUTASE) PHOSPHOGLUCOMUTASE |
AT5G53480 | PredictedSynthetic Lethality | FSW = 0.0091
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT2G45640 | Predictedtwo hybrid | FSW = 0.0219
| Unknown | SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18) PROTEIN BINDING / TRANSCRIPTION REGULATOR |
AT5G14170 | Predictedtwo hybrid | FSW = 0.0093
| Unknown | CHC1 |
AT3G13920 | PredictedAffinity Capture-MS | FSW = 0.0153
| Unknown | EIF4A1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 4A1) ATP-DEPENDENT HELICASE/ TRANSLATION INITIATION FACTOR |
AT2G03120 | PredictedAffinity Capture-MS | FSW = 0.0280
| Unknown | ATSPP (ARABIDOPSIS SIGNAL PEPTIDE PEPTIDASE) ASPARTIC-TYPE ENDOPEPTIDASE |
AT2G39740 | Predictedtwo hybrid | FSW = 0.0370
| Unknown | UNKNOWN PROTEIN |
AT4G09200 | Predictedtwo hybrid | FSW = 0.0370
| Unknown | SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN-CONTAINING PROTEIN |
AT5G55130 | Predictedtwo hybrid | FSW = 0.0156
| Unknown | CNX5 (CO-FACTOR FOR NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 5) MO-MOLYBDOPTERIN COFACTOR SULFURASE |
AT4G20330 | Predictedtwo hybridbiochemicaltwo hybrid | FSW = 0.1939
| Unknown | TRANSCRIPTION INITIATION FACTOR-RELATED |
AT1G52500 | PredictedSynthetic Lethality | FSW = 0.0583
| Unknown | ATMMH-1 (ARABIDOPSIS THALIANA MUTM HOMOLOG-1) DNA N-GLYCOSYLASE |
AT2G48100 | PredictedSynthetic Lethality | FSW = 0.0744
| Unknown | EXONUCLEASE FAMILY PROTEIN |
AT3G59540 | PredictedSynthetic Lethality | FSW = 0.0631
| Unknown | 60S RIBOSOMAL PROTEIN L38 (RPL38B) |
AT3G62770 | PredictedSynthetic Lethality | FSW = 0.0171
| Unknown | ATATG18A |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454