Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G65180 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown EXPRESSED IN 18 plant structures EXPRESSED DURING 9 growth stages CONTAINS InterPro DOMAIN/s Protein of unknown function DUF618 (InterProIPR006903) Regulation of nuclear pre-mRNA protein (InterProIPR006569) ENTH/VHS (InterProIPR008942) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT5G100601) Has 3523 Blast hits to 3241 proteins in 333 species Archae - 25 Bacteria - 251 Metazoa - 1575 Fungi - 421 Plants - 142 Viruses - 17 Other Eukaryotes - 1092 (source NCBI BLink) )

45 Proteins interacs with AT5G65180
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT1G76030

Predicted

Affinity Capture-MS

FSW = 0.0175

Unknown

VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT
AT5G19740

Predicted

Phenotypic Enhancement

FSW = 0.1896

Unknown

PEPTIDASE M28 FAMILY PROTEIN
AT5G13710

Predicted

Phenotypic Enhancement

FSW = 0.0571

Unknown

SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE
AT2G45300

Predicted

Phenotypic Enhancement

FSW = 0.0714

Unknown

3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE
AT5G53480

Predicted

Affinity Capture-MS

FSW = 0.0192

Unknown

IMPORTIN BETA-2 PUTATIVE
AT4G35800

Predicted

Affinity Capture-MS

Protein-peptide

Affinity Capture-MS

FSW = 0.0544

Unknown

NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G11890

Predicted

Phenotypic Suppression

FSW = 0.1584

Unknown

SEC22 TRANSPORTER
AT5G52640

Predicted

synthetic growth defect

FSW = 0.0251

Unknown

ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING
AT5G12370

Predicted

Affinity Capture-MS

FSW = 0.0156

Unknown

SEC10 (EXOCYST COMPLEX COMPONENT SEC10)
AT5G67270

Predicted

Synthetic Lethality

synthetic growth defect

interaction prediction

FSW = 0.1837

Unknown

ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING
AT3G12810

Predicted

Phenotypic Enhancement

FSW = 0.2160

Unknown

PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING
AT5G35910

Predicted

Phenotypic Enhancement

FSW = 0.1490

Unknown

3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN
AT3G13940

Predicted

Phenotypic Enhancement

FSW = 0.1089

Unknown

DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT5G27720

Predicted

two hybrid

interaction prediction

FSW = 0.0058

Unknown

EMB1644 (EMBRYO DEFECTIVE 1644)
AT3G06720

Predicted

Affinity Capture-MS

Affinity Capture-MS

interaction prediction

FSW = 0.0351

Unknown

IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER
AT1G07370

Predicted

Phenotypic Suppression

FSW = 0.1522

Unknown

PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING
AT2G36740

Predicted

Phenotypic Enhancement

FSW = 0.3386

Unknown

SWC2 DNA BINDING / TRANSCRIPTION FACTOR
AT2G06210

Predicted

Phenotypic Enhancement

FSW = 0.0765

Unknown

ELF8 (EARLY FLOWERING 8) BINDING
AT2G44950

Predicted

Phenotypic Enhancement

FSW = 0.1828

Unknown

HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING
AT4G17620

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0115

Unknown

GLYCINE-RICH PROTEIN
AT4G21710

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0318

Unknown

NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT2G37560

Predicted

Synthetic Lethality

FSW = 0.0180

Unknown

ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING
AT1G29150

Predicted

Phenotypic Enhancement

FSW = 0.0363

Unknown

ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)
AT1G75660

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.0253

Unknown

XRN3 5-3 EXORIBONUCLEASE
AT2G22690

Predicted

Phenotypic Enhancement

FSW = 0.0387

Unknown

PROTEIN BINDING / ZINC ION BINDING
AT3G21060

Predicted

Phenotypic Enhancement

FSW = 0.1952

Unknown

TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN
AT3G54380

Predicted

Phenotypic Enhancement

FSW = 0.2621

Unknown

SAC3/GANP FAMILY PROTEIN
AT3G55080

Predicted

Phenotypic Enhancement

FSW = 0.0918

Unknown

SET DOMAIN-CONTAINING PROTEIN
AT1G08780

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1710

Unknown

AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING
AT1G08840Predicted

synthetic growth defect

FSW = 0.0456

Unknown

EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING
AT1G15780

Predicted

Phenotypic Enhancement

FSW = 0.0785

Unknown

UNKNOWN PROTEIN
AT1G29990

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1164

Unknown

PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING
AT1G52740

Predicted

Phenotypic Enhancement

synthetic growth defect

FSW = 0.1825

Unknown

HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING
AT2G02760

Predicted

synthetic growth defect

Phenotypic Enhancement

FSW = 0.1418

Unknown

ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE
AT3G01090

Predicted

Phenotypic Enhancement

FSW = 0.0571

Unknown

AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE
AT3G22480

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1577

Unknown

PREFOLDIN-RELATED KE2 FAMILY PROTEIN
AT3G22590

Predicted

Synthetic Lethality

Synthetic Lethality

Phenotypic Enhancement

interaction prediction

FSW = 0.1655

Unknown

RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN
AT3G25100

Predicted

Synthetic Lethality

FSW = 0.0803

Unknown

CDC45 (CELL DIVISION CYCLE 45)
AT4G22140

Predicted

Phenotypic Enhancement

FSW = 0.1155

Unknown

DNA BINDING / PROTEIN BINDING / ZINC ION BINDING
AT4G33240

Predicted

Phenotypic Enhancement

FSW = 0.3043

Unknown

1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING
AT5G10260

Predicted

Phenotypic Enhancement

FSW = 0.1339

Unknown

ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING
AT5G43500

Predicted

Phenotypic Enhancement

FSW = 0.1241

Unknown

ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING
AT5G45600

Predicted

Phenotypic Enhancement

FSW = 0.2145

Unknown

GAS41 PROTEIN BINDING
AT5G49510

Predicted

Synthetic Lethality

interaction prediction

FSW = 0.1324

Unknown

PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING
AT5G63670

Predicted

Phenotypic Enhancement

FSW = 0.1432

Unknown

SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454