Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G65180 - ( FUNCTIONS IN molecular_function unknown INVOLVED IN biological_process unknown EXPRESSED IN 18 plant structures EXPRESSED DURING 9 growth stages CONTAINS InterPro DOMAIN/s Protein of unknown function DUF618 (InterProIPR006903) Regulation of nuclear pre-mRNA protein (InterProIPR006569) ENTH/VHS (InterProIPR008942) BEST Arabidopsis thaliana protein match is unknown protein (TAIRAT5G100601) Has 3523 Blast hits to 3241 proteins in 333 species Archae - 25 Bacteria - 251 Metazoa - 1575 Fungi - 421 Plants - 142 Viruses - 17 Other Eukaryotes - 1092 (source NCBI BLink) )
45 Proteins interacs with AT5G65180Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT1G76030 | PredictedAffinity Capture-MS | FSW = 0.0175
| Unknown | VACUOLAR ATP SYNTHASE SUBUNIT B / V-ATPASE B SUBUNIT / VACUOLAR PROTON PUMP B SUBUNIT / V-ATPASE 57 KDA SUBUNIT |
AT5G19740 | PredictedPhenotypic Enhancement | FSW = 0.1896
| Unknown | PEPTIDASE M28 FAMILY PROTEIN |
AT5G13710 | PredictedPhenotypic Enhancement | FSW = 0.0571
| Unknown | SMT1 (STEROL METHYLTRANSFERASE 1) STEROL 24-C-METHYLTRANSFERASE |
AT2G45300 | PredictedPhenotypic Enhancement | FSW = 0.0714
| Unknown | 3-PHOSPHOSHIKIMATE 1-CARBOXYVINYLTRANSFERASE / 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE / EPSP SYNTHASE |
AT5G53480 | PredictedAffinity Capture-MS | FSW = 0.0192
| Unknown | IMPORTIN BETA-2 PUTATIVE |
AT4G35800 | PredictedAffinity Capture-MSProtein-peptideAffinity Capture-MS | FSW = 0.0544
| Unknown | NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT1G11890 | PredictedPhenotypic Suppression | FSW = 0.1584
| Unknown | SEC22 TRANSPORTER |
AT5G52640 | Predictedsynthetic growth defect | FSW = 0.0251
| Unknown | ATHSP901 (HEAT SHOCK PROTEIN 901) ATP BINDING / UNFOLDED PROTEIN BINDING |
AT5G12370 | PredictedAffinity Capture-MS | FSW = 0.0156
| Unknown | SEC10 (EXOCYST COMPLEX COMPONENT SEC10) |
AT5G67270 | PredictedSynthetic Lethalitysynthetic growth defectinteraction prediction | FSW = 0.1837
| Unknown | ATEB1C (MICROTUBULE END BINDING PROTEIN 1) MICROTUBULE BINDING |
AT3G12810 | PredictedPhenotypic Enhancement | FSW = 0.2160
| Unknown | PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1) ATP BINDING / DNA BINDING / HELICASE/ NUCLEIC ACID BINDING |
AT5G35910 | PredictedPhenotypic Enhancement | FSW = 0.1490
| Unknown | 3-5 EXONUCLEASE DOMAIN-CONTAINING PROTEIN / HELICASE AND RNASE D C-TERMINAL DOMAIN-CONTAINING PROTEIN / HRDC DOMAIN-CONTAINING PROTEIN |
AT3G13940 | PredictedPhenotypic Enhancement | FSW = 0.1089
| Unknown | DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT5G27720 | Predictedtwo hybridinteraction prediction | FSW = 0.0058
| Unknown | EMB1644 (EMBRYO DEFECTIVE 1644) |
AT3G06720 | PredictedAffinity Capture-MSAffinity Capture-MSinteraction prediction | FSW = 0.0351
| Unknown | IMPA-1 (IMPORTIN ALPHA ISOFORM 1) BINDING / PROTEIN TRANSPORTER |
AT1G07370 | PredictedPhenotypic Suppression | FSW = 0.1522
| Unknown | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN) DNA BINDING / DNA POLYMERASE PROCESSIVITY FACTOR/ PROTEIN BINDING |
AT2G36740 | PredictedPhenotypic Enhancement | FSW = 0.3386
| Unknown | SWC2 DNA BINDING / TRANSCRIPTION FACTOR |
AT2G06210 | PredictedPhenotypic Enhancement | FSW = 0.0765
| Unknown | ELF8 (EARLY FLOWERING 8) BINDING |
AT2G44950 | PredictedPhenotypic Enhancement | FSW = 0.1828
| Unknown | HUB1 (HISTONE MONO-UBIQUITINATION 1) PROTEIN BINDING / PROTEIN HOMODIMERIZATION/ UBIQUITIN-PROTEIN LIGASE/ ZINC ION BINDING |
AT4G17620 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0115
| Unknown | GLYCINE-RICH PROTEIN |
AT4G21710 | PredictedAffinity Capture-MSAffinity Capture-MS | FSW = 0.0318
| Unknown | NRPB2 DNA BINDING / DNA-DIRECTED RNA POLYMERASE |
AT2G37560 | PredictedSynthetic Lethality | FSW = 0.0180
| Unknown | ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) DNA REPLICATION ORIGIN BINDING / PROTEIN BINDING |
AT1G29150 | PredictedPhenotypic Enhancement | FSW = 0.0363
| Unknown | ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9) |
AT1G75660 | PredictedAffinity Capture-MSAffinity Capture-MSAffinity Capture-MS | FSW = 0.0253
| Unknown | XRN3 5-3 EXORIBONUCLEASE |
AT2G22690 | PredictedPhenotypic Enhancement | FSW = 0.0387
| Unknown | PROTEIN BINDING / ZINC ION BINDING |
AT3G21060 | PredictedPhenotypic Enhancement | FSW = 0.1952
| Unknown | TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN |
AT3G54380 | PredictedPhenotypic Enhancement | FSW = 0.2621
| Unknown | SAC3/GANP FAMILY PROTEIN |
AT3G55080 | PredictedPhenotypic Enhancement | FSW = 0.0918
| Unknown | SET DOMAIN-CONTAINING PROTEIN |
AT1G08780 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1710
| Unknown | AIP3 (ABI3-INTERACTING PROTEIN 3) UNFOLDED PROTEIN BINDING |
AT1G08840 | Predictedsynthetic growth defect | FSW = 0.0456
| Unknown | EMB2411 (EMBRYO DEFECTIVE 2411) ATP BINDING / ATP-DEPENDENT DNA HELICASE/ DNA BINDING |
AT1G15780 | PredictedPhenotypic Enhancement | FSW = 0.0785
| Unknown | UNKNOWN PROTEIN |
AT1G29990 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1164
| Unknown | PDF6 (PREFOLDIN 6) UNFOLDED PROTEIN BINDING |
AT1G52740 | PredictedPhenotypic Enhancementsynthetic growth defect | FSW = 0.1825
| Unknown | HTA9 (HISTONE H2A PROTEIN 9) DNA BINDING |
AT2G02760 | Predictedsynthetic growth defectPhenotypic Enhancement | FSW = 0.1418
| Unknown | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) UBIQUITIN-PROTEIN LIGASE |
AT3G01090 | PredictedPhenotypic Enhancement | FSW = 0.0571
| Unknown | AKIN10 (ARABIDOPSIS SNF1 KINASE HOMOLOG 10) PROTEIN BINDING / PROTEIN KINASE |
AT3G22480 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1577
| Unknown | PREFOLDIN-RELATED KE2 FAMILY PROTEIN |
AT3G22590 | PredictedSynthetic LethalitySynthetic LethalityPhenotypic Enhancementinteraction prediction | FSW = 0.1655
| Unknown | RNA POL II ACCESSORY FACTOR CDC73 FAMILY PROTEIN |
AT3G25100 | PredictedSynthetic Lethality | FSW = 0.0803
| Unknown | CDC45 (CELL DIVISION CYCLE 45) |
AT4G22140 | PredictedPhenotypic Enhancement | FSW = 0.1155
| Unknown | DNA BINDING / PROTEIN BINDING / ZINC ION BINDING |
AT4G33240 | PredictedPhenotypic Enhancement | FSW = 0.3043
| Unknown | 1-PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE/ ATP BINDING / PHOSPHATIDYLINOSITOL PHOSPHATE KINASE/ PROTEIN BINDING / ZINC ION BINDING |
AT5G10260 | PredictedPhenotypic Enhancement | FSW = 0.1339
| Unknown | ATRABH1E (ARABIDOPSIS RAB GTPASE HOMOLOG H1E) GTP BINDING |
AT5G43500 | PredictedPhenotypic Enhancement | FSW = 0.1241
| Unknown | ATARP9 (ACTIN-RELATED PROTEIN 9) DNA BINDING / PROTEIN BINDING |
AT5G45600 | PredictedPhenotypic Enhancement | FSW = 0.2145
| Unknown | GAS41 PROTEIN BINDING |
AT5G49510 | PredictedSynthetic Lethalityinteraction prediction | FSW = 0.1324
| Unknown | PDF3 (PREFOLDIN 3) UNFOLDED PROTEIN BINDING |
AT5G63670 | PredictedPhenotypic Enhancement | FSW = 0.1432
| Unknown | SPT42 (SPT4 HOMOLOG 2) POSITIVE TRANSCRIPTION ELONGATION FACTOR/ ZINC ION BINDING |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454