Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G65720 - ( NFS1 ATP binding / cysteine desulfurase/ transaminase )
19 Proteins interacs with AT5G65720Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT4G26500 | Experimentaltwo hybrid | FSW = 0.0381
| Class B:plastidmitochondrionClass D:plastid (p = 0.78)mitochondrion (p = 0.82) | CPSUFE (CHLOROPLAST SULFUR E) ENZYME ACTIVATOR/ TRANSCRIPTION REGULATOR |
AT4G37910 | Predictedpull down | FSW = 0.0056
| Class C:mitochondrion | MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING |
AT3G01020 | PredictedAffinity Capture-MS | FSW = 0.1270
| Class C:mitochondrion | ISU2 (ISCU-LIKE 2) STRUCTURAL MOLECULE |
AT1G65290 | Predictedtandem affinity purification | FSW = 0.0242
| Class C:mitochondrion | MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING |
AT4G05450 | Predictedpull down | FSW = 0.0661
| Class C:mitochondrion | ADRENODOXIN-LIKE FERREDOXIN 2 |
AT2G46110 | Predictedpull down | FSW = 0.0519
| Class C:mitochondrion | KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1) 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE |
AT4G22220 | PredictedAffinity Capture-MSinteraction prediction | FSW = 0.1667
| Class C:mitochondrion | ISU1 STRUCTURAL MOLECULE |
AT2G39800 | Predictedpull down | FSW = 0.0485
| Unknown | P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1) DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHETASE |
AT2G28190 | PredictedSynthetic RescueSynthetic Rescueinteraction prediction | FSW = 0.0230
| Unknown | CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE |
AT3G54440 | Predictedpull down | FSW = 0.0303
| Unknown | GLYCOSIDE HYDROLASE FAMILY 2 PROTEIN |
AT3G02770 | Predictedpull down | FSW = 0.0909
| Unknown | DIMETHYLMENAQUINONE METHYLTRANSFERASE FAMILY PROTEIN |
AT3G09210 | Predictedpull down | FSW = 0.0227
| Unknown | PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR |
AT1G08830 | PredictedSynthetic RescueSynthetic Rescue | FSW = 0.0391
| Unknown | CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE |
AT3G12280 | PredictedPhenotypic Enhancement | FSW = 0.0054
| Unknown | RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING |
AT2G04560 | Predictedpull down | FSW = 0.0485
| Unknown | TRANSFERASE TRANSFERRING GLYCOSYL GROUPS |
AT3G49080 | Predictedpull down | FSW = 0.0261
| Unknown | RIBOSOMAL PROTEIN S9 FAMILY PROTEIN |
AT3G54470 | Predictedpull down | FSW = 0.0364
| Unknown | URIDINE 5-MONOPHOSPHATE SYNTHASE / UMP SYNTHASE (PYRE-F) (UMPS) |
AT5G20040 | Predictedpull down | FSW = 0.1212
| Unknown | ATIPT9 ATP BINDING / TRNA ISOPENTENYLTRANSFERASE |
AT5G35980 | PredictedAffinity Capture-MS | FSW = 0.0182
| Unknown | PROTEIN KINASE FAMILY PROTEIN |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454