Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Find locus: show subcellular location show Ontology

Export PPI as  



AtPIN will be upgraded. Please send your suggestions here

AT5G65720 - ( NFS1 ATP binding / cysteine desulfurase/ transaminase )

19 Proteins interacs with AT5G65720
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT4G26500

Experimental

two hybrid

FSW = 0.0381

Class B:

plastid

mitochondrion

Class D:

plastid (p = 0.78)

mitochondrion (p = 0.82)

CPSUFE (CHLOROPLAST SULFUR E) ENZYME ACTIVATOR/ TRANSCRIPTION REGULATOR
AT4G37910

Predicted

pull down

FSW = 0.0056

Class C:

mitochondrion

MTHSC70-1 (MITOCHONDRIAL HEAT SHOCK PROTEIN 70-1) ATP BINDING
AT3G01020

Predicted

Affinity Capture-MS

FSW = 0.1270

Class C:

mitochondrion

ISU2 (ISCU-LIKE 2) STRUCTURAL MOLECULE
AT1G65290

Predicted

tandem affinity purification

FSW = 0.0242

Class C:

mitochondrion

MTACP2 (MITOCHONDRIAL ACYL CARRIER PROTEIN 2) ACYL CARRIER/ METAL ION BINDING
AT4G05450

Predicted

pull down

FSW = 0.0661

Class C:

mitochondrion

ADRENODOXIN-LIKE FERREDOXIN 2
AT2G46110

Predicted

pull down

FSW = 0.0519

Class C:

mitochondrion

KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1) 3-METHYL-2-OXOBUTANOATE HYDROXYMETHYLTRANSFERASE
AT4G22220

Predicted

Affinity Capture-MS

interaction prediction

FSW = 0.1667

Class C:

mitochondrion

ISU1 STRUCTURAL MOLECULE
AT2G39800

Predicted

pull down

FSW = 0.0485

Unknown

P5CS1 (DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHASE 1) DELTA1-PYRROLINE-5-CARBOXYLATE SYNTHETASE
AT2G28190

Predicted

Synthetic Rescue

Synthetic Rescue

interaction prediction

FSW = 0.0230

Unknown

CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2) SUPEROXIDE DISMUTASE
AT3G54440

Predicted

pull down

FSW = 0.0303

Unknown

GLYCOSIDE HYDROLASE FAMILY 2 PROTEIN
AT3G02770

Predicted

pull down

FSW = 0.0909

Unknown

DIMETHYLMENAQUINONE METHYLTRANSFERASE FAMILY PROTEIN
AT3G09210

Predicted

pull down

FSW = 0.0227

Unknown

PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13) TRANSCRIPTION ELONGATION REGULATOR
AT1G08830

Predicted

Synthetic Rescue

Synthetic Rescue

FSW = 0.0391

Unknown

CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1) SUPEROXIDE DISMUTASE
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0054

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT2G04560Predicted

pull down

FSW = 0.0485

Unknown

TRANSFERASE TRANSFERRING GLYCOSYL GROUPS
AT3G49080

Predicted

pull down

FSW = 0.0261

Unknown

RIBOSOMAL PROTEIN S9 FAMILY PROTEIN
AT3G54470

Predicted

pull down

FSW = 0.0364

Unknown

URIDINE 5-MONOPHOSPHATE SYNTHASE / UMP SYNTHASE (PYRE-F) (UMPS)
AT5G20040

Predicted

pull down

FSW = 0.1212

Unknown

ATIPT9 ATP BINDING / TRNA ISOPENTENYLTRANSFERASE
AT5G35980

Predicted

Affinity Capture-MS

FSW = 0.0182

Unknown

PROTEIN KINASE FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

Learn more

How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454