Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G66010 - ( RNA binding / nucleic acid binding / nucleotide binding )

12 Proteins interacs with AT5G66010
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G19840

Predicted

Affinity Capture-MS

FSW = 0.0459

Class C:

nucleus

 FF DOMAIN-CONTAINING PROTEIN / WW DOMAIN-CONTAINING PROTEIN
AT5G44200

Predicted

in vitro

Affinity Capture-MS

Co-expression

FSW = 0.0469

Class C:

nucleus

 CBP20 (CAP-BINDING PROTEIN 20) RNA BINDING / RNA CAP BINDING
AT2G13540

Predicted

in vivo

in vitro

Affinity Capture-MS

Co-expression

FSW = 0.1184

Class C:

nucleus

 ABH1 (ABA HYPERSENSITIVE 1) RNA CAP BINDING
AT2G41100

Predicted

Gene fusion method

FSW = 0.2092

Unknown

 TCH3 (TOUCH 3) CALCIUM ION BINDING
AT5G50250

Predicted

Gene fusion method

FSW = 0.1498

Unknown

 31 KDA RIBONUCLEOPROTEIN CHLOROPLAST PUTATIVE / RNA-BINDING PROTEIN RNP-T PUTATIVE / RNA-BINDING PROTEIN 1/2/3 PUTATIVE / RNA-BINDING PROTEIN CP31 PUTATIVE
AT2G37220

Predicted

Gene fusion method

FSW = 0.1559

Unknown

 29 KDA RIBONUCLEOPROTEIN CHLOROPLAST PUTATIVE / RNA-BINDING PROTEIN CP29 PUTATIVE
AT4G35800

Predicted

in vivo

FSW = 0.0152

Unknown

 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT) DNA BINDING / DNA-DIRECTED RNA POLYMERASE
AT1G55150

Predicted

two hybrid

FSW = 0.0209

Unknown

 DEAD BOX RNA HELICASE PUTATIVE (RH20)
AT3G51310

Predicted

two hybrid

FSW = 0.0821

Unknown

 VPS35C (VPS35 HOMOLOG C)
AT5G09880

Predicted

two hybrid

FSW = 0.0444

Unknown

 RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN
AT4G10070

Predicted

in vitro

in vitro

in vivo

in vivo

FSW = 0.0485

Unknown

 KH DOMAIN-CONTAINING PROTEIN
AT2G28840

Predicted

Phenotypic Enhancement

FSW = 0.0305

Unknown

 ANKYRIN REPEAT FAMILY PROTEIN

Downloads

Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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