Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G66140 - ( PAD2 (PROTEASOME ALPHA SUBUNIT D 2) endopeptidase/ peptidase/ threonine-type endopeptidase )
17 Proteins interacs with AT5G66140Locus | Method | FSW | Cellular Compartment Classification (C3) | Description |
---|---|---|---|---|
AT3G51260 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.2954
| Class C:vacuoleplastid | PAD1 (20S PROTEASOME ALPHA SUBUNIT PAD1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G53850 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4085
| Class C:vacuole | PAE1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G27020 | PredictedPhylogenetic profile method | FSW = 0.4622
| Class C:vacuole | PAG1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT4G04910 | Predictedtwo hybrid | FSW = 0.0226
| Class C:vacuole | NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR) ATP BINDING / BINDING / NUCLEOSIDE-TRIPHOSPHATASE/ NUCLEOTIDE BINDING |
AT3G22110 | PredictedGene fusion methodPhylogenetic profile methodCo-expression | FSW = 0.0975
| Class C:vacuole | PAC1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G35590 | PredictedGene neighbors methodPhylogenetic profile method | FSW = 0.3765
| Class C:vacuole | PAA1 (PROTEASOME ALPHA SUBUNIT A 1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G45000 | Predictedtwo hybridCo-expression | FSW = 0.0945
| Unknown | 26S PROTEASOME REGULATORY COMPLEX SUBUNIT P42D PUTATIVE |
AT5G42790 | PredictedGene neighbors methodPhylogenetic profile methodCo-expression | FSW = 0.3769
| Unknown | PAF1 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT1G47250 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.4640
| Unknown | PAF2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT5G19330 | Predictedtwo hybrid | FSW = 0.0140
| Unknown | ARMADILLO/BETA-CATENIN REPEAT FAMILY PROTEIN / BTB/POZ DOMAIN-CONTAINING PROTEIN |
AT1G16470 | Predictedtwo hybridPhylogenetic profile methodCo-expression | FSW = 0.4858
| Unknown | PAB1 (PROTEASOME SUBUNIT PAB1) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G05840 | PredictedPhylogenetic profile method | FSW = 0.2824
| Unknown | PAA2 (20S PROTEASOME SUBUNIT PAA2) ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT3G14290 | Predictedtwo hybridPhylogenetic profile methodCo-expression | FSW = 0.4038
| Unknown | PAE2 ENDOPEPTIDASE/ PEPTIDASE/ THREONINE-TYPE ENDOPEPTIDASE |
AT2G47960 | Predictedtwo hybrid | FSW = 0.2000
| Unknown | UNKNOWN PROTEIN |
AT5G12410 | Predictedtwo hybridCo-expression | FSW = 0.1425
| Unknown | THUMP DOMAIN-CONTAINING PROTEIN |
AT5G43010 | Predictedtwo hybrid | FSW = 0.1111
| Unknown | RPT4A ATPASE |
AT1G79210 | PredictedPhylogenetic profile methodCo-expression | FSW = 0.2065
| Unknown | 20S PROTEASOME ALPHA SUBUNIT B PUTATIVE |
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Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from
FSW
FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in commonLearn more - FSWeight top ranked cut offs
C3
Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described
PEP
PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029Learn more
How to cite
If you find AtPIN interesting and want to use it in your work please cite usAtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454DOI:1471-2105/10/454