Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G66150 - ( glycosyl hydrolase family 38 protein )

9 Proteins interacs with AT5G66150
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT3G26720

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.1062

Unknown

GLYCOSYL HYDROLASE FAMILY 38 PROTEIN
AT5G13980

Predicted

Gene neighbors method

Phylogenetic profile method

Co-expression

FSW = 0.3036

Unknown

GLYCOSYL HYDROLASE FAMILY 38 PROTEIN
AT5G23300

Predicted

two hybrid

FSW = 0.1973

Unknown

PYRD (PYRIMIDINE D) DIHYDROOROTATE DEHYDROGENASE
AT4G08870

Predicted

two hybrid

FSW = 0.0345

Unknown

ARGINASE PUTATIVE
AT5G27770

Predicted

two hybrid

FSW = 0.2307

Unknown

60S RIBOSOMAL PROTEIN L22 (RPL22C)
AT2G39240

Predicted

two hybrid

FSW = 0.1469

Unknown

RNA POLYMERASE I TRANSCRIPTION FACTOR/ BINDING
AT3G27530

Predicted

two hybrid

FSW = 0.0142

Unknown

GC6 (GOLGIN CANDIDATE 6) BINDING / PROTEIN TRANSPORTER
AT5G06150

Predicted

two hybrid

FSW = 0.0189

Unknown

CYC1BAT CYCLIN-DEPENDENT PROTEIN KINASE REGULATOR
AT5G19000

Predicted

two hybrid

FSW = 0.0664

Unknown

ATBPM1 (BTB-POZ AND MATH DOMAIN 1) PROTEIN BINDING

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454