Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G66360 - ( ribosomal RNA adenine dimethylase family protein )

26 Proteins interacs with AT5G66360
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33210

Predicted

pull down

FSW = 0.0030

Unknown

HSP60-2 (HEAT SHOCK PROTEIN 60-2) ATP BINDING
AT3G26590

Predicted

biochemical

FSW = 0.0268

Unknown

MATE EFFLUX FAMILY PROTEIN
AT3G62870

Predicted

Affinity Capture-MS

FSW = 0.0144

Unknown

60S RIBOSOMAL PROTEIN L7A (RPL7AB)
AT2G39290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

biochemical

FSW = 0.1492

Unknown

PGP1 (PHOSPHATIDYLGLYCEROLPHOSPHATE SYNTHASE 1) CDP-ALCOHOL PHOSPHATIDYLTRANSFERASE/ CDP-DIACYLGLYCEROL-GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE
AT2G29690

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Reconstituted Complex

Co-purification

FSW = 0.5590

Unknown

ASA2 (ANTHRANILATE SYNTHASE 2) ANTHRANILATE SYNTHASE
AT2G14120

Predicted

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1341

Unknown

DYNAMIN-LIKE PROTEIN 2B (ADL2B)
AT5G23900

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.1481

Unknown

60S RIBOSOMAL PROTEIN L13 (RPL13D)
AT5G54840

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.1408

Unknown

SGP1 GTP BINDING
AT1G09060

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.4615

Unknown

TRANSCRIPTION FACTOR JUMONJI (JMJC) DOMAIN-CONTAINING PROTEIN
AT5G47630

Predicted

Affinity Capture-MS

FSW = 0.0295

Unknown

MTACP3 (MITOCHONDRIAL ACYL CARRIER PROTEIN 3) ACYL CARRIER/ COFACTOR BINDING
AT2G17130

Predicted

Reconstituted Complex

FSW = 0.2612

Unknown

IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2) ISOCITRATE DEHYDROGENASE (NAD+)/ OXIDOREDUCTASE ACTING ON THE CH-OH GROUP OF DONORS NAD OR NADP AS ACCEPTOR
AT2G19980

Predicted

Affinity Capture-MS

FSW = 0.0240

Unknown

ALLERGEN V5/TPX-1-RELATED FAMILY PROTEIN
AT3G45280

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.7024

Unknown

SYP72 (SYNTAXIN OF PLANTS 72) PROTEIN TRANSPORTER
AT3G12280

Predicted

Phenotypic Enhancement

FSW = 0.0042

Unknown

RBR1 (RETINOBLASTOMA-RELATED 1) TRANSCRIPTION FACTOR BINDING
AT1G63660

Predicted

pull down

FSW = 0.0194

Unknown

GMP SYNTHASE (GLUTAMINE-HYDROLYZING) PUTATIVE / GLUTAMINE AMIDOTRANSFERASE PUTATIVE
AT1G71280

Predicted

Affinity Capture-MS

FSW = 0.0489

Unknown

DEAD/DEAH BOX HELICASE PUTATIVE
AT2G20280

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

FSW = 0.4664

Unknown

ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN
AT2G23820

Predicted

Affinity Capture-MS

FSW = 0.0504

Unknown

METAL-DEPENDENT PHOSPHOHYDROLASE HD DOMAIN-CONTAINING PROTEIN
AT2G38600

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3521

Unknown

ACID PHOSPHATASE CLASS B FAMILY PROTEIN
AT3G15460

Predicted

Reconstituted Complex

Affinity Capture-MS

FSW = 0.0749

Unknown

BRIX DOMAIN-CONTAINING PROTEIN
AT3G59790

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-Western

Reconstituted Complex

FSW = 0.1716

Unknown

ATMPK10 MAP KINASE/ KINASE
AT1G34580

Predicted

Affinity Capture-MS

FSW = 0.0831

Unknown

MONOSACCHARIDE TRANSPORTER PUTATIVE
AT2G31020

Predicted

Affinity Capture-MS

FSW = 0.0178

Unknown

ORP1A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 1A) OXYSTEROL BINDING
AT5G13480

Predicted

Affinity Capture-MS

FSW = 0.0682

Unknown

FY PROTEIN BINDING
AT5G16290

Predicted

Affinity Capture-MS

Affinity Capture-MS

Affinity Capture-MS

FSW = 0.3214

Unknown

ACETOLACTATE SYNTHASE SMALL SUBUNIT PUTATIVE
AT2G47420

Predicted

Phylogenetic profile method

Co-expression

FSW = 0.0167

Unknown

DIMETHYLADENOSINE TRANSFERASE PUTATIVE

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Fasta sequences:

Proteins

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Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454