Arabidopsis thaliana protein interaction network
Laboratório de Biologia Integrativa e Sistêmica (LaBIS)
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AT5G66470 - ( GTP binding / RNA binding )

13 Proteins interacs with AT5G66470
LocusMethodFSW Cellular Compartment Classification (C3)Description
AT2G33800

Predicted

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FSW = 0.2200

Class C:

plastid

 RIBOSOMAL PROTEIN S5 FAMILY PROTEIN
AT3G17170

Predicted

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FSW = 0.0756

Class C:

plastid

 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3) STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G14320

Predicted

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FSW = 0.1029

Class C:

plastid

 30S RIBOSOMAL PROTEIN S13 CHLOROPLAST (CS13)
ATCG00160Predicted

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FSW = 0.0791

Class C:

plastid

 CHLOROPLAST RIBOSOMAL PROTEIN S2
ATCG00380Predicted

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FSW = 0.1511

Class C:

plastid

 CHLOROPLAST ENCODED RIBOSOMAL PROTEIN S4
ATCG00830Predicted

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FSW = 0.0978

Class C:

plastid

 ENCODES A CHLOROPLAST RIBOSOMAL PROTEIN L2 A CONSTITUENT OF THE LARGE SUBUNIT OF THE RIBOSOMAL COMPLEX
AT4G02930

Predicted

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FSW = 0.0634

Unknown

 ELONGATION FACTOR TU PUTATIVE / EF-TU PUTATIVE
AT4G30930

Predicted

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FSW = 0.2000

Unknown

 NFD1 (NUCLEAR FUSION DEFECTIVE 1) RNA BINDING / STRUCTURAL CONSTITUENT OF RIBOSOME
AT5G26860

Predicted

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FSW = 0.1074

Unknown

 LON1 (LON PROTEASE 1) ATP BINDING / ATP-DEPENDENT PEPTIDASE/ SERINE-TYPE PEPTIDASE
AT1G62850

Predicted

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FSW = 0.1693

Unknown

 TRANSLATION RELEASE FACTOR
AT3G49080

Predicted

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FSW = 0.1458

Unknown

 RIBOSOMAL PROTEIN S9 FAMILY PROTEIN
AT5G64650

Predicted

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FSW = 0.1763

Unknown

 RIBOSOMAL PROTEIN L17 FAMILY PROTEIN
AT3G14100

Predicted

Gene fusion method

FSW = 0.0263

Unknown

 OLIGOURIDYLATE-BINDING PROTEIN PUTATIVE

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Fasta sequences:

Proteins

DNA

Quick help

Experimental: This means that the indicated PPI was experimentally demonstrated using Arabidopsis thaliana proteins as model of study. The experiment indicated links to the publication of which this interaction was annotated from
Predicted: The indicated PPI was proposed based on ortholgs studies. The experiment indicated links to the publication of the orthologous PPI was annotated from

FSW

FSW is the Functional Similarity Weight. It represents the proportion of interaction partners that two proteins have in common

Learn more - FSWeight top ranked cut offs

C3

Class A: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated and both, target and source, were indicated as expressed in same cellular compartment
Class B: The PPI is a direct evidence (experimental), the subcellular location was experimentally demonstrated but both, target and source, were indicated as expressed in different cellular compartment
Class C: Same as Class A but the PPI is predicted
Class D: Same as Class A but subcellular location was predicted. P(exp|pred) indicates the probability of this particular predicted location be experimentally demonstrated given all data available on AtPINDB
Unknown: There is no available data to calculate the C3 or the data does not fit onto any class previously described

PEP

PEP is the posterior probability of this particular PPI be experimentally demonstrated once it was predicted. For this release p = 0.0030. If they share same cell compartment p = 0.0029

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How to cite

If you find AtPIN interesting and want to use it in your work please cite us

AtPIN: Arabidopsis thaliana Protein Interaction Network
Marcelo M Brandao, Luiza L Dantas and Marcio C Silva-Filho
BMC Bioinformatics 2009, 10:454

DOI:1471-2105/10/454

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